Projects per year
Organisation profile
Organisation profile
The research group Industrial Microbiology and Food Biotechnology (formerly Industrial Microbiology, Fermentation Technology and Downstream Processing; IMDO) has been created in October 1994. It originates from the subunit of Biochemical Engineering of the Department of Chemical Engineering and Industrial Chemistry. The research theme deals with 'Research and Development for a Healthy Diet'. The establishment of IMDO meant the actual start of research in food biotechnology at the Vrije Universiteit Brussel, which is nowadays one of the keystones of the university's research in applied biological sciences/bioengineering sciences. IMDO conquered a very specific niche in the field of industrial food biotechnology, i.e. the qualitative and quantitative (mathematical modelling) study of starter cultures (lactic acid bacteria, acetic acid bacteria, coagulase-negative staphylococci, bifidobacteria, and yeasts) with particular functionalities, within the area of food fermentation, food safety, and human health. IMDO specialised in (spontaneous) food fermentations, process control, and predictive microbiology. Research of IMDO focuses on the microbial ecology of spontaneous food fermentation processes, production of fine chemicals (organic acids, bacteriocins, exopolysaccharides, aromas) and enzyme activities for application in the food industry, both fermentative production processes and their downstream processing, and in situ production processes using functional, multiple starter cultures (bacteriocin-producing starters for cheese, sausage and sourdough manufacture, exopolysaccharide-producing strains for the production of yoghurt and other fermented milk drinks, aroma-producing starter cultures in cheese, sourdough, cocoa, and coffee fermentation). Human health-related topics encompass probiotics and prebiotics as functional foods (antimicrobial potential, underlying mechanisms, microbiological and technological aspects of commerical preparations). In general, the current research topics are: - Exploration of the species diversity and functional analysis (metabolite target analysis, transcriptome analysis) of traditional, artisan fermented foods (dairy products, meat products, sourdoughs, cocoa, vegetables, sour beers): food ecosystem biodiversity, taxonomy, new taxa, new molecules (metabolites); - polyphasic analysis of the population dynamics (culture-dependent and culture-independent) and metabolite kinetics of microbial food ecosystems; - selection of interesting starter cultures or bioprotective cultures, based on physiological and technological characterization of new, natural food isolates; - analysis of the interactions between fucntional starter cultures or bioprotective cultures and the food matrix, including elements from the background microbiota; - mathematical description of the behaviour (growth and product formation), functionality, interactions, and competitiveness of functional starter cultures (lactic acid bacteria, acetic acid bacteria, coagulase-negative staphylococci, bifidobacteria, and yeasts) and bioprotective cultures of lactic acid bacteria and coagulase-negative staphylococci (positive predictive modelling) in simulated food fermentations (milk, meat, cereals, cocoa, coffee) and/or modified-atmosphere-packaged meat products; - linking the species diversity of fermented foods, the microbial fermentation process, and the quality of the food product (food qualitomics); - relationship between milk quality and udder health concerning coagulase-negative staphylococci; antimicrobial potential of probiotic bifidobacteria and lactobacilli (molecular identification); - mechanistic elucidation of the bifidogenic and butyrogenic effects of inulin-type fructans as prebiotic substrates: (non)selective degradation, butyrate production, gas formation; - development and valorisation of new, functioal starter cultures, bioprotective cultures, and efficacious pro- and prebiotics; - development of industrial food fermentation processes (yoghurt, cheese, fermented sausage, sourdough, cocoa, coffee, water kefir) incorporating superior artisan quality and health-promoting characteristics.
Keywords
- outer membrane proteins
- new materials
- yoghurt
- fungal growth
- Fermentation
- Modellisation
- functional foods
- Sourdough
- Yoghurt
- Yeast morphology
- Cheese
- enzymes
- Fungal morphology
- Nanotechnology
- tartaric acid
- sausage
- Rhodococcus
- downstream processing
- Lactobacillus
- starter cultures
- bioconversion
- biosynthesis
- yeast immobilisation
- Microbial Processes
- Yeast immobilization
- Fermented meat products
- predictive modelling
- Beer
- Streptococcus
- chromatography
- Biosynthesis
- Tartaric acid
- Chromatography
- Continuous beer fermentation
- fungal morphology
- continuous beer fermentation
- Probiotics and prebiotics
- Bioprocess Engineering
- Industrial Microbiology
- perfusion
- Exopolysaccharides
- membrane reactors
- Lactic Acid Bacteria
- heavy metal resistance
- Predictive modelling
- Bacteriocins
- cheese
- Functional foods
- fermentations
- Bifidobacterium
- sourdough
- Yoghurt cheese
- New materials
- Food Microbiology
- Saccharomyces
- Fermentation Technology
- Heavy metal resistance
- Downstream Processing
- Aromas
- Membrane reactors
- Starter cultures
- Perfusion
- Downstream processing
- Enzymes
- Lactic acid bacteria
- Fungal growth
- Bioconversion
- Sausage
- Biochemical Technology
- Trichoderma
- Enterococcus
- Microbial Biotechnology
- Food Industry
- Biochemical Processes
- yeast morphology
- nanotechnology
- Environmental Microbiology
- Outer membrane proteins
Fingerprint
Collaborations and top research areas from the last five years
Profiles
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Ziggy Baert
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - Technical Assistant
- Industrial Microbiology
Person: Administrative/technical staff
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Francesco Bonaldo
- Vrije Universiteit Brussel
- Faculty of Sciences and Bioengineering Sciences
- Department of Bio-engineering Sciences - Doctoral scholarship
- Industrial Microbiology
Person: Researcher, PhD, Doctoral student
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Dries Bongaerts
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - Scientific employee
- Faculty of Sciences and Bioengineering Sciences
- Industrial Microbiology
Person: Researcher, PhD, Doctoral student
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Arne Bouchez
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - Doctoral scholarship
- Industrial Microbiology
- Faculty of Sciences and Bioengineering Sciences
Person: Researcher, PhD, Doctoral student
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OZR4211: Bilateral cooperation within the framework of a joint doctoral project: benchfee for joint PhD VUB - ULiège, ALI Amira
24/11/23 → 23/11/27
Project: Fundamental
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EUAR85: HealthFerm : Innovative pulse and cereal-based food fermentations for human health and sustainable diets
1/09/22 → 31/08/26
Project: Applied
Research output
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Considering the nutritional benefits and health implications of red meat in the era of meatless initiatives
Kavanaugh, M., Rodgers, D., Rodriguez, N. & Leroy, F., 27 Jan 2025, In: FRONTIERS IN NUTRITION. 12, 9 p., 1525011.Research output: Contribution to journal › Article › peer-review
Open AccessFile32 Downloads (Pure) -
Effect of lactic acid-rich sourdough bread on appetite regulation: A randomized, double-blind controlled trial
Chatonidi, G., Pradal-Álvarez-Prida, I., De Vuyst, L., Courtin, C. M. & Verbeke, K., Jan 2025, In: Current Research in Food Science. 10 (2025), 10 p., 100956.Research output: Contribution to journal › Article › peer-review
Open AccessFile46 Downloads (Pure) -
Plant use, foodways, and the agricultural economy of the Ghor as-Safi site complex from the Iron Age to the Mamluk Period: longue durée insights from the macrobotanical assemblage
Hansen, A. & Heinrich, F., 2025, (Accepted/In press) Ancient Landscapes of Zoara IIIa: Conclusive and Specialised Studies from Surveys and Excavations at the Ghor as-Safi in Jordan, 1997–2019.. Politis, K. (ed.). Ionian University, p. 169-252 84 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › Research › peer-review
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The production of esters by specific sourdough lactic acid bacteria species is limited by the precursor concentrations.
Pradal-Álvarez-Prida, I., Weckx, S. & De Vuyst, L., 27 Feb 2025, In: Applied and Environmental Microbiology. 91, 52 p., e02216-24.Research output: Contribution to journal › Article › peer-review
Open AccessFile2 Downloads (Pure) -
A framework for adequate nourishment: balancing nutrient density and food processing levels within the context of culturally and regionally appropriate diets
Leroy, F., Beal, T., de Mûelenaere, N., De Smet, S., Heinrich, F., Iannotti, L., Johnston, B., Mann, N., Mente, A. & Stanton, A., 2024, (Accepted/In press) In: Animal Frontiers. 40 p.Research output: Contribution to journal › Article › peer-review
Open Access
Activities
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PLOS ONE (Journal)
Frits Heinrich (Peer reviewer)
2025Activity: Publication peer-review and editorial work › Publication peer-review
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Sustainable Trade Regimes with Europe and Africa through Mapping Innovation, New-Technology and Growth-Mindset (STREAMING). EU Horizon Project Kick-Off-Meeting
Frits Heinrich (Supervisor) & Annette Hansen (Participant)
5 Mar 2025 → 6 Mar 2025Activity: Participating in or organising an event › Participation in conference
File -
IEHCA - Institut Européen d'Histoire et des Cultures de l'Alimentation (External organisation)
Frits Heinrich (Member)
2025 → …Activity: Membership › Membership of external research organisation
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New insights into Gouda cheese starter culture performance
Stefan Weckx (Invited speaker) & Luc De Vuyst (Invited speaker)
4 Jun 2024 → 6 Jun 2024Activity: Talk or presentation › Talk or presentation at a conference
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Steering Committee Meeting XII
Inés Pradal-Álvarez-Prida (Speaker)
18 Oct 2024Activity: Talk or presentation › Talk or presentation at a workshop/seminar
Equipment
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Cooled centrifuge Dupont Sorvall RC-5C Plus
Industrial MicrobiologyFacility/equipment: Equipment › no e-resource/single sited
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Fermentor Braun Biostat B (15.0 l)
Industrial MicrobiologyFacility/equipment: Equipment › no e-resource/single sited
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Fermentor Braun Biostat C (15.0 l)
Industrial MicrobiologyFacility/equipment: Equipment › no e-resource/single sited
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Fermentor Braun Biostat CT (5.0 l)
Industrial MicrobiologyFacility/equipment: Equipment › no e-resource/single sited
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Flemish Supercomputer Center VSC
Stefan Weckx (Consortium partner)
Department of Bio-engineering SciencesFacility/equipment: Equipment › no e-resource/single sited
Datasets
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High-throughput amplicon sequencing to assess the impact of processing factors on the development of microbial communities during spontaneous meat fermentation
Weckx, S. (Creator), Van Reckem, E. N. (Creator), De Vuyst, L. (Creator) & Leroy, F. (Creator), European Nucleotide Archive, Jun 2021
https://www.ebi.ac.uk/ena/data/view/PRJEB43224
Dataset
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The genome of Mammaliicoccus sciuri IMDO-S72
Weckx, S. (Creator), Van Der Veken, D. (Creator) & Leroy, F. (Creator), European Nucleotide Archive, Dec 2021
https://www.ebi.ac.uk/ena/browser/view/PRJEB46201
Dataset
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Wooden barrels help to steer the lambic beer fermentation and maturation process
Weckx, S. (Creator), Vermote, L. (Creator) & De Vuyst, L. (Creator), European Nucleotide Archive, 1 Mar 2023
https://www.ebi.ac.uk/ena/browser/view/PRJEB53155
Dataset
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Starter culture-initiated cocoa fermentations followed up trough metagenetics - CR2017
Weckx, S. (Creator), Diaz Munoz, C. (Creator) & De Vuyst, L. (Creator), European Nucleotide Archive, Dec 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB40850
Dataset
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Temporal shotgun metagenomic dissection of the lambic beer fermentation ecosystem
Weckx, S. (Creator), De Roos, J. (Creator) & De Vuyst, L. (Creator), European Nucleotide Archive, Jul 2020
https://www.ebi.ac.uk/ena/browser/view/PRJEB28363
Dataset