Microbiology

2022

Engineering transcriptional regulation in Escherichia coli using an archaeal TetR-family transcription factor

Sybers, D., Bernauw, A., Maklad, H. R. M. A., El Masri, D., Charlier, D., De Mey, M., Bervoets, I. & Peeters, E., 30 Jan 2022, In : Gene. 809, 9 p., 146010.

Research output: Contribution to journal › Article

2021

Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA

Garcia-Rodriguez, G., Charlier, D., Wilmaerts, D., Michiels, J. & Loris, R., 9 Jul 2021, In : Nucleic Acids Research. 49, 12, p. 7164-7178 15 p.

Research output: Contribution to journal › Article

Open Access

File

23 Downloads (Pure)

A review on the potential of filamentous fungi for microbial self-healing of concrete

Van Wylick, A., Monclaro, A. V., Elsacker, E., Vandelook, S., Rahier, H., De Laet, L., Cannella, D. & Peeters, E., 18 Nov 2021, In : Fungal biology and biotechnology. 8, 1, 12 p., 16.

Research output: Contribution to journal › Scientific review

Open Access

File

18 Downloads (Pure)

A Transcriptomic Atlas of the Ectomycorrhizal Fungus Laccaria bicolor

Ruytinx, J., Miyauchi, S., Hartmann-Wittulsky, S., Pereira, M. D. F., Guinet, F., Churin, J-L., Put, C., Tacon, F. L., Veneault-Fourrey, C., Martin, F. M. & Kohler, A., Dec 2021, In : Microorganisms. 9, 12, 23 p., 2612.

Research output: Contribution to journal › Article

Bacterial polyhydroxyalkanoate biosynthesis at high temperature from a natural and bioengineering perspective

Matia Sangrador, X., Moanis, R., Hennecke, U. & Peeters, E., 28 Jun 2021

Research output: Thesis › Master's Thesis

Bistable expression of a toxin-antitoxin system located in a cryptic prophage of Escherichia coliO157:H7

Jurenas, D., Fraikin, N., Goormaghtigh, F., De Bruyn, P., Vandervelde, A., Jove, T., Charlier, D., Loris, R. & Van Melderen, L., Nov 2021, In : mBio.

Research output: Contribution to journal › Article

Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

Martinez-Liu, L., Hernandez-Guerrero, R., Rivera-Gomez, N., Martinez-Nuñez, M. A., Escobar-Turriza, P., Peeters, E. & Perez-Rueda, E., 2 Jul 2021, In : PLOS ONE. 16, 7, 13 p., e0254025.

Research output: Contribution to journal › Article

Open Access

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

Lofgren, L. A., Nguyen, N. H., Vilgalys, R., Ruytinx, J., Liao, H-L., Branco, S., Kuo, A., LaButti, K., Lipzen, A., Andreopoulos, W., Pangilinan, J., Riley, R., Hundley, H., Na, H., Barry, K., Grigoriev, I. V., Stajich, J. E. & Kennedy, P. G., Apr 2021, In : New Phytologist. 230, 2, p. 774-792 19 p.

Research output: Contribution to journal › Article

5 Citations (Scopus)

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Guevarra, R. B., Magez, S., Peeters, E., Chung, M. S., Kim, K. H. & Radwanska, M., Jan 2021, In : PLOS ONE. 16, 1, 27 p., e0239792.

Research output: Contribution to journal › Article

Open Access

2 Citations (Scopus)

Current state and future prospects of pure mycelium materials

Vandelook, S., Elsacker, E., Van Wylick, A., De Laet, L. & Peeters, E., 20 Dec 2021, In : Fungal biology and biotechnology. 8, 1, 10 p., 20.

Research output: Contribution to journal › Article

Open Access

File

18 Downloads (Pure)

Disentangling the role of ectomycorrhizal fungi in plant nutrient acquisition along a Zn gradient using X-ray imaging

Zhang, K., Tappero, R., Ruytinx, J., Branco, S. & Liao, H-L., 20 Dec 2021, In : Science of the Total Environment. 801, 149481.

Research output: Contribution to journal › Article

Entropic pressure controls olgomerization of Vibrio cholerae ParD2 antitoxin

Garcia Rodriguez, G., Girardin, Y., Volkov, O., Singh, R. K., Muruganandam, G., Van Dyck, J., Sobott, F., Versées, W., Charlier, D. & Loris, R., 18 Jun 2021, In : Acta Crystallographica Section D: Structural Biology (2016- ). 77, Pt 7, p. 904-920 17 p.

Research output: Contribution to journal › Article

Open Access

File

1 Citation (Scopus)

21 Downloads (Pure)

From Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization

Soldan, R., Sanguankiattichai, N., Bach-Pages, M., Bervoets, I., Huang, W. E. & Preston, G. M., Apr 2021, In : Environmental Microbiology. 23, 4, p. 2070-2085 16 p.

Research output: Contribution to journal › Article

Open Access

2 Citations (Scopus)

Identification of archaea in a mixed microbial community

Giménez del Rey, F. J., Mijnendonckx, K. & Peeters, E., 9 Nov 2021.

Research output: Unpublished contribution to conference › Poster

File

6 Downloads (Pure)

Mechanical characteristics of bacterial cellulose-reinforced mycelium composite materials

Elsacker, E., Vandelook, S., Damsin, B., Van Wylick, A., Peeters, E. & De Laet, L., 4 Dec 2021, In : Fungal biology and biotechnology. 8, 1, 14 p., 18.

Research output: Contribution to journal › Article

Open Access

File

10 Downloads (Pure)

Microbial Production of Polyhydroxyalkanoates by Thermophiles (poster)

Moanis, R., Schroyen, B., Hennecke, U., Brancart, J., Van den Brande, N. & Peeters, E., 20 Jun 2021, (Unpublished).

Research output: Unpublished contribution to conference › Poster

Mycelium matters - an interdisciplinary exploration of the fabrication and properties of mycelium-based materials

Vanden Elsacker, E., 20 Apr 2021, VUBPRESS.

Research output: Thesis › PhD Thesis

Open Access

File

494 Downloads (Pure)

Netwerken: een verhaal over mycelium, moleculen en mensen

Vanden Elsacker, E. & Peeters, E., 2021, KVAB standpunten 72 - Kunst, wetenschap en technologie in symbiose Elisabeth Monard, red., p. 48-49.

Research output: Contribution to specialist/vulgarizing publication › Article › Vulgarizing

File

Post-transcriptional regulation of the heat shock response of Sulfolobus acidocaldarius by RNA-thermometers

Baes, R. & Peeters, E., 26 Jul 2021.

Research output: Unpublished contribution to conference › Poster

RNA-Thermometer mediated post-transcriptional regulation of the Heat Shock Response in the thermoacidophilic Crenarchaeon Sulfolobus acidocaldarius

Baes, R. & Peeters, E., 20 Jun 2021.

Research output: Unpublished contribution to conference › Poster

The biology of thermoacidophilic archaea from the order Sulfolobales

Lewis, A. M., Recalde, A., Bräsen, C., Counts, J. A., Nussbaum, P., Bost, J., Schocke, L., Shen, L., Willard, D. J., Quax, T. E. F., Peeters, E., Siebers, B., Albers, S-V. & Kelly, R. M., 1 Jul 2021, In : FEMS Microbiology Reviews. 45, 4, fuaa063.

Research output: Contribution to journal › Article

5 Citations (Scopus)

2020

A comprehensive framework for the production of mycelium-based lignocellulosic composites

Elsacker, E., Vandelook, S., Van Wylick, A., Ruytinx, J., De Laet, L. & Peeters, E., 10 Jul 2020, In : Science of the Total Environment. 725, 138431.

Research output: Contribution to journal › Article

20 Citations (Scopus)

273 Downloads (Pure)

Activation of the Cell Wall Stress Response in Pseudomonas aeruginosa Infected by a Pf4 Phage Variant

Tortuel, D., Tahrioui, A., Rodrigues, S., Cambronel, M., Boukerb, A. M., Maillot, O., Verdon, J., Bere, E., Nusser, M., Brenner-Weiss, G., David, A., Azuama, O. C., Feuilloley, M. G. J., Orange, N., Lesouhaitier, O., Cornelis, P., Chevalier, S. & Bouffartigues, E., Nov 2020, In : Microorganisms. 8, 11, p. 1-20 20 p., 1700.

Research output: Contribution to journal › Article

Open Access

File

5 Downloads (Pure)

Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius

Baes, R., Lemmens, L., Mignon, K., Carlier, M. & Peeters, E., 19 Jun 2020, In : Extremophiles. 24, p. 681–692 12 p.

Research output: Contribution to journal › Article

Open Access

File

5 Downloads (Pure)

DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In : Frontiers in Microbiology. 11, 17 p., 1635.

Research output: Contribution to journal › Article

Open Access

5 Citations (Scopus)

Extensive in vivo screening of uncharacterized Lrp-type transcriptional regulators for the development of biosensors

Bernauw, A., Ryssegem, F., Bervoets, I. & Peeters, E., 2 Nov 2020.

Research output: Unpublished contribution to conference › Poster

Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation

Bazzicalupo, A. L., Ruytinx, J., Ke, Y-H., Coninx, L., Colpaert, J. V., Nguyen, N. H., Vilgalys, R. & Branco, S., 27 Oct 2020, In : Molecular Ecology. 29, 21, p. 4157-4169 13 p.

Research output: Contribution to journal › Article

6 Citations (Scopus)

Membrane-Interactive Compounds From Pistacia lentiscus L. Thwart Pseudomonas aeruginosa Virulence

Tahrioui, A., Ortiz, S., Azuama, O. C., Bouffartigues, E., Benalia, N., Tortuel, D., Maillot, O., Chemat, S., Kritsanida, M., Feuilloley, M., Orange, N., Michel, S., Lesouhaitier, O., Cornelis, P., Grougnet, R., Boutefnouchet, S. & Chevalier, S., 26 May 2020, In : Frontiers in Microbiology. 11, 1068.

Research output: Contribution to journal › Article

Open Access

File

12 Citations (Scopus)

10 Downloads (Pure)

Microbial community structure and dynamics during radioactive waste disposal

Giménez del Rey, F. J., Mijnendonckx, K. & Peeters, E., 13 Nov 2020. 1 p.

Research output: Unpublished contribution to conference › Poster

File

8 Downloads (Pure)

Moleculaire mechanismen van hitteschok-geïnduceerde transcriptiefactoren in de thermoacidofiele crenarchaeon Sulfolobus acidocaldarius.

Lemmens, L., 2020, (Unpublished)

Research output: Thesis › PhD Thesis

Phosphorylation of the acyl-CoA binding pocket of the FadR transcription regulator in Sulfolobus acidocaldarius

Maklad, H. R., Gutierrez, G. J., Esser, D., Siebers, B. & Peeters, E., Aug 2020, In : Biochimie. 175, p. 120-124 5 p.

Research output: Contribution to journal › Article

Open Access

File

3 Citations (Scopus)

14 Downloads (Pure)

Phosphorylation of transcription factors as a signal transduction mechanism in the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius

Maklad, H. R. M. A., 2020, (Unpublished)

Research output: Thesis › PhD Thesis

Putting an end to the Pseudomonas aeruginosa IQS controversy

Cornelis, P., Feb 2020, In : MicrobiologyOpen. 9, 2, e962.

Research output: Contribution to journal › Article

Open Access

File

21 Citations (Scopus)

21 Downloads (Pure)

Tackling Pseudomonas aeruginosa Virulence by Mulinane-Like Diterpenoids from Azorella atacamensis

Azuama, O. C., Ortiz, S., Quirós-Guerrero, L., Bouffartigues, E., Tortuel, D., Maillot, O., Feuilloley, M., Cornelis, P., Lesouhaitier, O., Grougnet, R., Boutefnouchet, S., Wolfender, J-L., Chevalier, S. & Tahrioui, A., 2 Dec 2020, In : Biomolecules. 10, 12, p. 1-25 25 p., 1626.

Research output: Contribution to journal › Article

Open Access

File

4 Citations (Scopus)

9 Downloads (Pure)

The events that may contribute to subgingival dysbiosis: a focus on the interplay between iron, sulfide and oxygen

Chathoth, K., Martin, B., Cornelis, P., Yvenou, S., Bonnaure-Mallet, M. & Baysse, C., 1 Jul 2020, In : FEMS Microbiology Letters. 367, 14

Research output: Contribution to journal › Article

Open Access

1 Citation (Scopus)

The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX

Bouffartigues, E., Si Hadj Mohand, I., Maillot, O., Tortuel, D., Omnes, J., David, A., Tahrioui, A., Duchesne, R., Azuama, C. O., Nusser, M., Brenner-Weiss, G., Bazire, A., Connil, N., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A., Cornelis, P. & Chevalier, S., 21 Oct 2020, In : Frontiers in Microbiology. 11, 14 p., 579495.

Research output: Contribution to journal › Article

Open Access

File

5 Citations (Scopus)

14 Downloads (Pure)

Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa

Yang, W., Wei, Q., Tong, Q., Cui, K., He, G., Lin, L., Ma, L. Z., Cornelis, P. & Wang, Y., 17 Dec 2020, In : Frontiers in Microbiology. 11, 18 p., 517462.

Research output: Contribution to journal › Article

Open Access

File

2 Citations (Scopus)

7 Downloads (Pure)

2019

A script for initiating molecular biology studies with non-conventional yeasts based on Saccharomycopsis schoenii

Kayacan, Y., Griffiths, A. M. & Wendland, J., Dec 2019, In : Microbiological Research. 229, 126342.

Research output: Contribution to journal › Article

Open Access

2 Citations (Scopus)

A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

Wang, K., Sybers, D., Maklad, H. R., Lemmens, L., Lewyllie, C., Zhou, X., Schult, F., Bräsen, C., Siebers, B., Valegård, K., Lindås, A-C. & Peeters, E., 4 Apr 2019, In : Nature Communications. 10, 1, 16 p., 1542.

Research output: Contribution to journal › Article

Open Access

File

23 Citations (Scopus)

18 Downloads (Pure)

Characterization of a bacterial-like FadR transcription factor involved in fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

Sybers, D., Lemmens, L., Wang, K., Zhou, X., Shen, L., Brasen, C., Siebers, B., Lindas, A-C. & Peeters, E., 1 Feb 2019.

Research output: Unpublished contribution to conference › Unpublished abstract

Competitive Repression of the artPIQM Operon for Arginine and Ornithine Transport by Arginine Repressor and Leucine-Responsive Regulatory Protein in Escherichia coli

Torres Montaguth, O. E., Bervoets, I., Peeters, E. & Charlier, D., Jul 2019, In : Frontiers in Microbiology. 10, JULY, 14 p., 1563.

Research output: Contribution to journal › Article

Open Access

File

7 Citations (Scopus)

8 Downloads (Pure)

Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

Bervoets, I. & Charlier, D., 1 May 2019, In : FEMS Microbiology Reviews. 43, 3, p. 304-339 36 p.

Research output: Contribution to journal › Scientific review

Open Access

File

45 Citations (Scopus)

179 Downloads (Pure)

Editorial overview: Tissue, cell and pathway engineering

Peeters, E. & De Mey, M., Oct 2019, In : Current Opinion in Biotechnology. 59, p. iii-v 3 p.

Research output: Contribution to journal › Editorial

Open Access

File

8 Downloads (Pure)

Extracellular DNA release, quorum sensing, and PrrF1/F2 small RNAs are key players in Pseudomonas aeruginosa tobramycin-enhanced biofilm formation

Tahrioui, A., Duchesne, R., Bouffartigues, E., Rodrigues, S., Maillot, O., Tortuel, D., Hardouin, J., Taupin, L., Groleau, M-C., Dufour, A., Déziel, E., Brenner-Weiss, G., Feuilloley, M., Orange, N., Lesouhaitier, O., Cornelis, P. & Chevalier, S., 1 Dec 2019, In : npj biofilms and microbiomes. 5, 1, 15.

Research output: Contribution to journal › Article

Open Access

20 Citations (Scopus)

Extracytoplasmic function sigma factors in Pseudomonas aeruginosa

Chevalier, S., Bouffartigues, E., Bazire, A., Tahrioui, A., Duchesne, R., Tortuel, D., Maillot, O., Clamens, T., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A. & Cornelis, P., Jul 2019, In : Biochimica et Biophysica Acta Gene Regulatory Mechanisms. 1862, 7, p. 706-721 16 p.

Research output: Contribution to journal › Scientific review

23 Citations (Scopus)

Microbiology

Research output

Search results