Microbiology

Research output

Research output per year 1970 2021

• 11973 Citations
• 47 h-Index
• 246 Article
• 64 Meeting abstract (Book)
• 38 Poster
• 8 Scientific review
• 29 More
  • 7 Chapter
  • 7 Unpublished abstract
  • 4 Book
  • 4 Conference paper
  • 2 Other contribution
  • 1 Other report
  • 1 Editorial
  • 1 PhD Thesis
  • 1 Master's Thesis
  • 1 Working paper

Research output per year

Research output per year

Search results

• 2021

  Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA

  Garcia-Rodriguez, G., Charlier, D., Wilmaerts, D., Michiels, J. & Loris, R., 9 Jul 2021, In : Nucleic Acids Research. 49, 12, p. 7164-7178 15 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Dimerization 100%
  • Ribonucleases 98%
  • Eukaryota 91%
  • Nucleotides 71%
  • Antitoxins 61%
  16 Downloads (Pure)

• Bacterial polyhydroxyalkanoate biosynthesis at high temperature from a natural and bioengineering perspective

  Matia Sangrador, X., Moanis, R., Hennecke, U. & Peeters, E., 28 Jun 2021

  Research output: Thesis › Master's Thesis

• Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

  Martinez-Liu, L., Hernandez-Guerrero, R., Rivera-Gomez, N., Martinez-Nuñez, M. A., Escobar-Turriza, P., Peeters, E. & Perez-Rueda, E., 2 Jul 2021, In : PLOS ONE. 16, 7, 13 p., e0254025.

  Research output: Contribution to journal › Article

  • Archaea 100%
  • Genomics 83%
  • Transcription Factors 61%
  • Bacteria 55%
  • DNA 45%

• Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

  Lofgren, L. A., Nguyen, N. H., Vilgalys, R., Ruytinx, J., Liao, H-L., Branco, S., Kuo, A., LaButti, K., Lipzen, A., Andreopoulos, W., Pangilinan, J., Riley, R., Hundley, H., Na, H., Barry, K., Grigoriev, I. V., Stajich, J. E. & Kennedy, P. G., Apr 2021, In : New Phytologist. 230, 2, p. 774-792 19 p.

  Research output: Contribution to journal › Article

  • Suillus 100%
  • Host Specificity 81%
  • host specificity 72%
  • Genomics 67%
  • Fungi 59%
  3 Citations (Scopus)

• Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

  Guevarra, R. B., Magez, S., Peeters, E., Chung, M. S., Kim, K. H. & Radwanska, M., Jan 2021, In : PLOS ONE. 16, 1, 27 p., e0239792.

  Research output: Contribution to journal › Article

  • Pantoea 100%
  • Virulence Factors 62%
  • Microbial Drug Resistance 60%
  • Genome 41%
  • Interleukin-10 40%
  2 Citations (Scopus)

• Disentangling the role of ectomycorrhizal fungi in plant nutrient acquisition along a Zn gradient using X-ray imaging

  Zhang, K., Tappero, R., Ruytinx, J., Branco, S. & Liao, H-L., 8 Aug 2021, In : Science of the Total Environment. 801, 149481.

  Research output: Contribution to journal › Article

  • Fungi 100%
  • Nutrients 92%
  • Zinc 78%
  • X rays 66%
  • fungus 64%

• Entropic pressure controls olgomerization of Vibrio cholerae ParD2 antitoxin

  Garcia Rodriguez, G., Girardin, Y., Volkov, O., Singh, R. K., Muruganandam, G., Van Dyck, J., Sobott, F., Versées, W., Charlier, D. & Loris, R., 18 Jun 2021, In : Acta Crystallographica Section D: Structural Biology (2016- ). 77, Pt 7, p. 904-920 17 p.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Inosine Diphosphate 100%
  • Antitoxins 82%
  • Vibrio cholerae 74%
  • Pressure 38%
  • Streptococcus agalactiae 36%
  6 Downloads (Pure)

• From Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization

  Soldan, R., Sanguankiattichai, N., Bach-Pages, M., Bervoets, I., Huang, W. E. & Preston, G. M., Apr 2021, In : Environmental Microbiology. 23, 4, p. 2070-2085 16 p.

  Research output: Contribution to journal › Article

  • bioluminescence 100%
  • Population Dynamics 89%
  • Plant Immunity 66%
  • fluorescence 65%
  • Pseudomonas syringae 62%
  2 Citations (Scopus)

• Microbial Production of Polyhydroxyalkanoates by Thermophiles (poster)

  Moanis, R., Schroyen, B., Hennecke, U., Brancart, J., Van den Brande, N. & Peeters, E., 20 Jun 2021, (Unpublished).

  Research output: Unpublished contribution to conference › Poster

• MYCELIUM MATTERS: An interdisciplinary exploration of the fabrication and properties of mycelium-based materials

  Vanden Elsacker, E., 20 Apr 2021, VUBPRESS.

  Research output: Thesis › PhD Thesis

  Open Access

  File
  247 Downloads (Pure)

• RNA-Thermometer mediated post-transcriptional regulation of the Heat Shock Response in the thermoacidophilic Crenarchaeon Sulfolobus acidocaldarius

  Baes, R. & Peeters, E., 20 Jun 2021.

  Research output: Unpublished contribution to conference › Poster

• The biology of thermoacidophilic archaea from the order Sulfolobales

  Lewis, A. M., Recalde, A., Bräsen, C., Counts, J. A., Nussbaum, P., Bost, J., Schocke, L., Shen, L., Willard, D. J., Quax, T. E. F., Peeters, E., Siebers, B., Albers, S-V. & Kelly, R. M., 1 Jul 2021, In : FEMS Microbiology Reviews. 45, 4

  Research output: Contribution to journal › Article

  • Sulfolobales 100%
  • Archaea 59%
  • Chemoautotrophic Growth 25%
  • Hot Springs 19%
  • Extreme Environments 19%
  3 Citations (Scopus)
• 2020

  A comprehensive framework for the production of mycelium-based lignocellulosic composites

  Elsacker, E., Vandelook, S., Van Wylick, A., Ruytinx, J., De Laet, L. & Peeters, E., 10 Jul 2020, In : Science of the Total Environment. 725, 138431.

  Research output: Contribution to journal › Article

  Open Access

  File
  11 Citations (Scopus)

  233 Downloads (Pure)

• Activation of the Cell Wall Stress Response in Pseudomonas aeruginosa Infected by a Pf4 Phage Variant

  Tortuel, D., Tahrioui, A., Rodrigues, S., Cambronel, M., Boukerb, A. M., Maillot, O., Verdon, J., Bere, E., Nusser, M., Brenner-Weiss, G., David, A., Azuama, O. C., Feuilloley, M. G. J., Orange, N., Lesouhaitier, O., Cornelis, P., Chevalier, S. & Bouffartigues, E., Nov 2020, In : Microorganisms. 8, 11, p. 1-20 20 p., 1700.

  Research output: Contribution to journal › Article

  • Prophages 100%
  • Cell Wall 73%
  • Biofilms 71%
  • Bacteriophages 71%
  • Pseudomonas aeruginosa 67%

• Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius

  Baes, R., Lemmens, L., Mignon, K., Carlier, M. & Peeters, E., 19 Jun 2020, In : Extremophiles. 24, p. 681–692 12 p.

  Research output: Contribution to journal › Article

  • Sulfolobus acidocaldarius 100%
  • Heat-Shock Response 62%
  • Temperature 40%
  • Heat-Shock Proteins 16%
  • Hot Springs 12%

• DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

  Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In : Frontiers in Microbiology. 11, 17 p., 1635.

  Research output: Contribution to journal › Article

  • Cupriavidus 100%
  • Silver 57%
  • Transcriptional Activation 49%
  • DNA 30%
  • Nucleic Acid Repetitive Sequences 21%
  4 Citations (Scopus)

• Extensive in vivo screening of uncharacterized Lrp-type transcriptional regulators for the development of biosensors

  Bernauw, A., Ryssegem, F., Bervoets, I. & Peeters, E., 2 Nov 2020.

  Research output: Unpublished contribution to conference › Poster

  • Leucine-Responsive Regulatory Protein 100%
  • Biosensing Techniques 67%
  • Transcription Factors 41%
  • Amino Acids 22%
  • Ligands 15%

• Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation

  Bazzicalupo, A. L., Ruytinx, J., Ke, Y-H., Coninx, L., Colpaert, J. V., Nguyen, N. H., Vilgalys, R. & Branco, S., 27 Oct 2020, In : Molecular Ecology. 29, 21, p. 4157-4169 13 p.

  Research output: Contribution to journal › Article

  • Suillus luteus 100%
  • copy number variation 83%
  • Heavy Metals 73%
  • Soil 66%
  • polymorphism 64%
  5 Citations (Scopus)

• Membrane-Interactive Compounds From Pistacia lentiscus L. Thwart Pseudomonas aeruginosa Virulence

  Tahrioui, A., Ortiz, S., Azuama, O. C., Bouffartigues, E., Benalia, N., Tortuel, D., Maillot, O., Chemat, S., Kritsanida, M., Feuilloley, M., Orange, N., Michel, S., Lesouhaitier, O., Cornelis, P., Grougnet, R., Boutefnouchet, S. & Chevalier, S., 26 May 2020, In : Frontiers in Microbiology. 11, 1068.

  Research output: Contribution to journal › Article

  • Pistacia 100%
  • Pseudomonas aeruginosa 56%
  • Virulence 52%
  • ginkgolic acid 46%
  • Membranes 35%
  10 Citations (Scopus)

• Microbial community structure and dynamics during radioactive waste disposal

  Giménez del Rey, F. J., Mijnendonckx, K. & Peeters, E., 13 Nov 2020. 1 p.

  Research output: Unpublished contribution to conference › Poster

  File

  • Boom clay 100%
  • natural barrier 47%
  • porewater 42%
  • biosphere 16%
  4 Downloads (Pure)

• Phosphorylation of the acyl-CoA binding pocket of the FadR transcription regulator in Sulfolobus acidocaldarius

  Maklad, H. R., Gutierrez, G. J., Esser, D., Siebers, B. & Peeters, E., Aug 2020, In : Biochimie. 175, p. 120-124 5 p.

  Research output: Contribution to journal › Article

  • Sulfolobus acidocaldarius 100%
  • Phosphorylation 90%
  • Acyl Coenzyme A 75%
  • Transcription 65%
  • Chromosomes 32%
  2 Citations (Scopus)

• Putting an end to the Pseudomonas aeruginosa IQS controversy

  Cornelis, P., Feb 2020, In : MicrobiologyOpen. 9, 2, e962.

  Research output: Contribution to journal › Article

  • aeruginaldehyde 100%
  • pyochelin 71%
  • Thiazoles 60%
  • Siderophores 54%
  • Pseudomonas aeruginosa 36%
  16 Citations (Scopus)

• Tackling Pseudomonas aeruginosa Virulence by Mulinane-Like Diterpenoids from Azorella atacamensis

  Azuama, O. C., Ortiz, S., Quirós-Guerrero, L., Bouffartigues, E., Tortuel, D., Maillot, O., Feuilloley, M., Cornelis, P., Lesouhaitier, O., Grougnet, R., Boutefnouchet, S., Wolfender, J-L., Chevalier, S. & Tahrioui, A., 2 Dec 2020, In : Biomolecules. 10, 12, p. 1-25 25 p., 1626.

  Research output: Contribution to journal › Article

  • mulinane 100%
  • Apiaceae 67%
  • Diterpenes 57%
  • Virulence Factors 44%
  • Pseudomonas aeruginosa 39%
  3 Citations (Scopus)

• The events that may contribute to subgingival dysbiosis: a focus on the interplay between iron, sulfide and oxygen

  Chathoth, K., Martin, B., Cornelis, P., Yvenou, S., Bonnaure-Mallet, M. & Baysse, C., 1 Jul 2020, In : FEMS Microbiology Letters. 367, 14

  Research output: Contribution to journal › Article

  • Sulfides 100%
  • Dysbiosis 97%
  • Microbiota 76%
  • Iron 62%
  • Oxygen 53%
  1 Citation (Scopus)

• The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX

  Bouffartigues, E., Si Hadj Mohand, I., Maillot, O., Tortuel, D., Omnes, J., David, A., Tahrioui, A., Duchesne, R., Azuama, C. O., Nusser, M., Brenner-Weiss, G., Bazire, A., Connil, N., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A., Cornelis, P. & Chevalier, S., 21 Oct 2020, In : Frontiers in Microbiology. 11, 14 p., 579495.

  Research output: Contribution to journal › Article

  • Sigma Factor 100%
  • Operon 82%
  • Pseudomonas aeruginosa 69%
  • Heat-Shock Response 55%
  • Temperature 53%
  3 Citations (Scopus)

• Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa

  Yang, W., Wei, Q., Tong, Q., Cui, K., He, G., Lin, L., Ma, L. Z., Cornelis, P. & Wang, Y., 17 Dec 2020, In : Frontiers in Microbiology. 11, 18 p., 517462.

  Research output: Contribution to journal › Article

  • tanreqing 100%
  • Quorum Sensing 63%
  • Chinese Traditional Medicine 53%
  • Pseudomonas aeruginosa 46%
  • Regulon 16%
  1 Citation (Scopus)
• 2019

  A script for initiating molecular biology studies with non-conventional yeasts based on Saccharomycopsis schoenii

  Kayacan, Y., Griffiths, A. M. & Wendland, J., Dec 2019, In : Microbiological Research. 229, 126342.

  Research output: Contribution to journal › Article

  • Saccharomycopsis 100%
  • Molecular Biology 42%
  • Yeasts 42%
  • Saccharomyces cerevisiae 24%
  • Genetic Engineering 8%
  2 Citations (Scopus)

• A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

  Wang, K., Sybers, D., Maklad, H. R., Lemmens, L., Lewyllie, C., Zhou, X., Schult, F., Bräsen, C., Siebers, B., Valegård, K., Lindås, A-C. & Peeters, E., 4 Apr 2019, In : Nature Communications. 10, 1, 16 p., 1542.

  Research output: Contribution to journal › Article

  Open Access

  • Sulfolobus acidocaldarius 100%
  • fatty acids 74%
  • Metabolism 71%
  • metabolism 69%
  • organisms 61%
  17 Citations (Scopus)

• Characterization of a bacterial-like FadR transcription factor involved in fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

  Sybers, D., Lemmens, L., Wang, K., Zhou, X., Shen, L., Brasen, C., Siebers, B., Lindas, A-C. & Peeters, E., 1 Feb 2019.

  Research output: Unpublished contribution to conference › Unpublished abstract

• Competitive Repression of the artPIQM Operon for Arginine and Ornithine Transport by Arginine Repressor and Leucine-Responsive Regulatory Protein in Escherichia coli

  Torres Montaguth, O. E., Bervoets, I., Peeters, E. & Charlier, D., Jul 2019, In : Frontiers in Microbiology. 10, JULY, 14 p., 1563.

  Research output: Contribution to journal › Article

  Open Access

  • Leucine-Responsive Regulatory Protein 100%
  • Ornithine 71%
  • Operon 59%
  • Arginine 50%
  • Escherichia coli 38%
  7 Citations (Scopus)

• Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

  Bervoets, I. & Charlier, D., 1 May 2019, In : FEMS Microbiology Reviews. 43, 3, p. 304-339 36 p.

  Research output: Contribution to journal › Scientific review

  Open Access

  File

  • Synthetic Biology 100%
  • Bacterial Genes 95%
  • Operon 38%
  • Gene Expression Regulation 38%
  • Virulence 31%
  38 Citations (Scopus)

  137 Downloads (Pure)

• Editorial overview: Tissue, cell and pathway engineering

  Peeters, E. & De Mey, M., Oct 2019, In : Current Opinion in Biotechnology. 59, p. iii-v 3 p.

  Research output: Contribution to journal › Editorial

• Extracellular DNA release, quorum sensing, and PrrF1/F2 small RNAs are key players in Pseudomonas aeruginosa tobramycin-enhanced biofilm formation

  Tahrioui, A., Duchesne, R., Bouffartigues, E., Rodrigues, S., Maillot, O., Tortuel, D., Hardouin, J., Taupin, L., Groleau, M-C., Dufour, A., Déziel, E., Brenner-Weiss, G., Feuilloley, M., Orange, N., Lesouhaitier, O., Cornelis, P. & Chevalier, S., 1 Dec 2019, In : npj biofilms and microbiomes. 5, 1, 15.

  Research output: Contribution to journal › Article

  Open Access

  • Quorum Sensing 100%
  • Tobramycin 98%
  • Biofilms 78%
  • Pseudomonas aeruginosa 73%
  • RNA 54%
  17 Citations (Scopus)

• Extracytoplasmic function sigma factors in Pseudomonas aeruginosa

  Chevalier, S., Bouffartigues, E., Bazire, A., Tahrioui, A., Duchesne, R., Tortuel, D., Maillot, O., Clamens, T., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A. & Cornelis, P., Jul 2019, In : Biochimica et Biophysica Acta Gene Regulatory Mechanisms. 1862, 7, p. 706-721 16 p.

  Research output: Contribution to journal › Scientific review

  • Sigma Factor 100%
  • Pseudomonas aeruginosa 69%
  • Regulon 39%
  • Cell Wall 30%
  • Iron 25%
  23 Citations (Scopus)

• Fatty acid degradation in Sulfolobus acidocaldarius

  Zhou, X., Christian, S., Sybers, D., Wang, K., Peeters, E., Lindås, A-C., Brasen, C. & Siebers, B., Mar 2019, (Submitted).

  Research output: Unpublished contribution to conference › Unpublished abstract

• Fatty acid degradation in Sulfolobus acidocaldarius

  Zhou, X., Schmerling, C., Sybers, D., Wang, K., Peeters, E., Lindås, A-C., Brasen, C. & Siebers, B., Mar 2019.

  Research output: Unpublished contribution to conference › Poster

• Genetic Tool Development For a Thermoacidophilic Archaeon

  Sybers, D. & Peeters, E., 2 Sep 2019.

  Research output: Unpublished contribution to conference › Poster

• Genetic Tool Development For Sulfolobus acidocaldarius, a Thermoacidophilic Archaeon

  Sybers, D., Swinnen, J. & Peeters, E., 18 Oct 2019, (Unpublished).

  Research output: Unpublished contribution to conference › Poster

• Genetic tool development for the hyperthermoacidophilic archaeon Sulfolobus acidocaldarius

  Sybers, D. & Peeters, E., 3 Jun 2019.

  Research output: Unpublished contribution to conference › Poster

• Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

  Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Houdt, R. V., 18 Jan 2019, In : Genes. 10, 1, 21 p., 63.

  Research output: Contribution to journal › Article

  Open Access

  • Cupriavidus 100%
  • Platinum 57%
  • Metals 31%
  • Cytochromes a 30%
  • Genome 24%
  5 Citations (Scopus)

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors

  Baes, R., Lemmens, L. & Peeters, E., 21 Jul 2019.

  Research output: Unpublished contribution to conference › Poster

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors (BSM)

  Baes, R., Lemmens, L. & Peeters, E., 18 Oct 2019.

  Research output: Unpublished contribution to conference › Poster

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors (GRS)

  Baes, R., Lemmens, L. & Peeters, E., 20 Jul 2019.

  Research output: Unpublished contribution to conference › Poster

• Host Peptidic Hormones Affecting Bacterial Biofilm Formation and Virulence

  Lesouhaitier, O., Clamens, T., Rosay, T., Desriac, F., Louis, M., Rodrigues, S., Gannesen, A., Plakunov, V. K., Bouffartigues, E., Tahrioui, A., Bazire, A., Dufour, A., Cornelis, P., Chevalier, S. & Feuilloley, M. G. J., 2019, In : Journal of Innate Immunity. 11, 3, p. 227-241 15 p.

  Research output: Contribution to journal › Scientific review

  Open Access

  • Biofilms 100%
  • Virulence 88%
  • Hormones 70%
  • Communication 30%
  • Bacterial Physiological Phenomena 29%
  11 Citations (Scopus)

• Mechanical, physical and chemical characterisation of mycelium-based composites with different types of lignocellulosic substrates

  Elsacker, E., Vandelook, S., Brancart, J., Peeters, E. & De Laet, L., 22 Jul 2019, In : PLoS ONE. 14, 7, 20 p., e0213954.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Mycelium 100%
  • Flax 36%
  • Thermal Conductivity 27%
  • Wool 21%
  • Cannabis 17%
  22 Citations (Scopus)

  138 Downloads (Pure)

• Mechanical, physical and chemical characterization of mycelium-based composites with different types of lignocellulosic substrates

  Vanden Elsacker, E., Vandelook, S., Brancart, J., Peeters, E. & De Laet, L., 7 Mar 2019, Biorxiv, 24 p.

  Research output: Working paper

• Mycelium-based materials at the dawn of the Anthropocene

  Vanden Elsacker, E., De Laet, L. & Peeters, E., Jul 2019, Structures and Architecture - Bridging the Gap and Crossing Borders: Proceedings of the Fourth International Conference on Structures and Architecture (ICSA 2019). CRC Press, Taylor & Francis, Boca Raton, p. 1083-1090

  Research output: Chapter in Book/Report/Conference proceeding › Conference paper

  Open Access
  1 Citation (Scopus)

• Non-monotonic auto-regulation in single gene circuits

  Descheemaeker, L., Peeters, E. & de Buyl, S., 2 May 2019, In : PLoS ONE. 14, 5, 18 p., e0216089.

  Research output: Contribution to journal › Article

  Open Access

  • autoregulation 100%
  • gene regulatory networks 85%
  • Gene Regulatory Networks 83%
  • oscillation 76%
  • Genes 68%

• Overexpression of RAD51 Enables PCR-Based Gene Targeting in Lager Yeast

  Bernardi, B., Kayacan, Y., Akan, M. & Wendland, J., 5 Jul 2019, In : Microorganisms. 7, 7, 192.

  Research output: Contribution to journal › Article

  Open Access
  4 Citations (Scopus)

• Regulation of arginine biosynthesis, catabolism and transport in Escherichia coli

  Charlier, D. & Bervoets, I., Aug 2019, In : Amino Acids. 51, 8, p. 1103-1127 25 p.

  Research output: Contribution to journal › Scientific review

  • Biosynthesis 100%
  • Escherichia coli 79%
  • Arginine 57%
  • Nitrogen 24%
  • Genes 22%
  12 Citations (Scopus)