Microbiology

Research output

Research output per year 1970 2021

• 11282 Citations
• 47 h-Index
• 245 Article
• 64 Meeting abstract (Book)
• 36 Poster
• 8 Scientific review
• 28 More
  • 7 Chapter
  • 7 Unpublished abstract
  • 4 Book
  • 4 Conference paper
  • 2 Other contribution
  • 1 Other report
  • 1 Editorial
  • 1 PhD Thesis
  • 1 Working paper

Research output per year

Research output per year

Search results

• 2021

  Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

  Lofgren, L. A., Nguyen, N. H., Vilgalys, R., Ruytinx, J., Liao, H-L., Branco, S., Kuo, A., LaButti, K., Lipzen, A., Andreopoulos, W., Pangilinan, J., Riley, R., Hundley, H., Na, H., Barry, K., Grigoriev, I. V., Stajich, J. E. & Kennedy, P. G., Apr 2021, In : New Phytologist. 230, 2, p. 774-792 19 p.

  Research output: Contribution to journal › Article

  • Suillus
  • Host Specificity
  • host specificity
  • Genomics
  • Fungi

• Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

  Guevarra, R. B., Magez, S., Peeters, E., Chung, M. S., Kim, K. H. & Radwanska, M., Jan 2021, In : PLOS ONE. 16, 1, 27 p., e0239792.

  Research output: Contribution to journal › Article

  • Pantoea
  • Virulence Factors
  • Microbial Drug Resistance
  • Genome
  • Interleukin-10
  1 Citation (Scopus)

• Entropic pressure controls olgomerization of Vibrio cholerae ParD2 antitoxin

  Garcia Rodriguez, G., Girardin, Y., Volkov, O., Singh, R. K., Muruganandam, G., Van Dyck, J., Sobott, F., Versées, W., Charlier, D. & Loris, R., 8 May 2021, (Accepted/In press) In : Acta Crystallographica Section D: Structural Biology (2016- ). 77

  Research output: Contribution to journal › Article

  • Inosine Diphosphate
  • Antitoxins
  • Vibrio cholerae
  • Pressure
  • Streptococcus agalactiae

• From Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization

  Soldan, R., Sanguankiattichai, N., Bach-Pages, M., Bervoets, I., Huang, W. E. & Preston, G. M., Apr 2021, In : Environmental Microbiology. 23, 4, p. 2070-2085 16 p.

  Research output: Contribution to journal › Article

  • bioluminescence
  • Population Dynamics
  • Plant Immunity
  • fluorescence
  • Pseudomonas syringae

• MYCELIUM MATTERS: An interdisciplinary exploration of the fabrication and properties of mycelium-based materials

  Vanden Elsacker, E., 20 Apr 2021, VUBPRESS.

  Research output: Thesis › PhD Thesis

  Open Access

  File
  49 Downloads (Pure)

• The biology of thermoacidophilic archaea from the order Sulfolobales

  Lewis, A. M., Recalde, A., Bräsen, C., Counts, J. A., Nussbaum, P., Bost, J., Schocke, L., Shen, L., Willard, D. J., Quax, T. E. F., Peeters, E., Siebers, B., Albers, S-V. & Kelly, R. M., 21 Jan 2021, In : FEMS Microbiology Reviews.

  Research output: Contribution to journal › Article

  • Sulfolobales
  • Archaea
  • Chemoautotrophic Growth
  • Hot Springs
  • Extreme Environments
• 2020

  A comprehensive framework for the production of mycelium-based lignocellulosic composites

  Elsacker, E., Vandelook, S., Van Wylick, A., Ruytinx, J., De Laet, L. & Peeters, E., 10 Jul 2020, In : Science of the Total Environment. 725, 138431.

  Research output: Contribution to journal › Article

  Open Access

  File
  9 Citations (Scopus)

  46 Downloads (Pure)

• Activation of the Cell Wall Stress Response in Pseudomonas aeruginosa Infected by a Pf4 Phage Variant

  Tortuel, D., Tahrioui, A., Rodrigues, S., Cambronel, M., Boukerb, A. M., Maillot, O., Verdon, J., Bere, E., Nusser, M., Brenner-Weiss, G., David, A., Azuama, O. C., Feuilloley, M. G. J., Orange, N., Lesouhaitier, O., Cornelis, P., Chevalier, S. & Bouffartigues, E., Nov 2020, In : Microorganisms. 8, 11, p. 1-20 20 p., 1700.

  Research output: Contribution to journal › Article

  • Prophages
  • Cell Wall
  • Biofilms
  • Bacteriophages
  • Pseudomonas aeruginosa

• Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius

  Baes, R., Lemmens, L., Mignon, K., Carlier, M. & Peeters, E., 19 Jun 2020, In : Extremophiles. 24, p. 681–692 12 p.

  Research output: Contribution to journal › Article

  • Sulfolobus acidocaldarius
  • Heat-Shock Response
  • Temperature
  • Heat-Shock Proteins
  • Hot Springs

• DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

  Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In : Frontiers in Microbiology. 11, 17 p., 1635.

  Research output: Contribution to journal › Article

  • Cupriavidus
  • Silver
  • Transcriptional Activation
  • DNA
  • Nucleic Acid Repetitive Sequences
  2 Citations (Scopus)

• Extensive in vivo screening of uncharacterized Lrp-type transcriptional regulators for the development of biosensors

  Bernauw, A., Ryssegem, F., Bervoets, I. & Peeters, E., 2 Nov 2020.

  Research output: Unpublished contribution to conference › Poster

  • Leucine-Responsive Regulatory Protein
  • Biosensing Techniques
  • Transcription Factors
  • Amino Acids
  • Ligands

• Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation

  Bazzicalupo, A. L., Ruytinx, J., Ke, Y-H., Coninx, L., Colpaert, J. V., Nguyen, N. H., Vilgalys, R. & Branco, S., 27 Oct 2020, In : Molecular Ecology. 29, 21, p. 4157-4169 13 p.

  Research output: Contribution to journal › Article

  • Suillus luteus
  • copy number variation
  • Heavy Metals
  • Soil
  • polymorphism
  4 Citations (Scopus)

• Membrane-Interactive Compounds From Pistacia lentiscus L. Thwart Pseudomonas aeruginosa Virulence

  Tahrioui, A., Ortiz, S., Azuama, O. C., Bouffartigues, E., Benalia, N., Tortuel, D., Maillot, O., Chemat, S., Kritsanida, M., Feuilloley, M., Orange, N., Michel, S., Lesouhaitier, O., Cornelis, P., Grougnet, R., Boutefnouchet, S. & Chevalier, S., 26 May 2020, In : Frontiers in Microbiology. 11, 1068.

  Research output: Contribution to journal › Article

  • Pistacia
  • Pseudomonas aeruginosa
  • Virulence
  • ginkgolic acid
  • Membranes
  8 Citations (Scopus)

• Microbial community structure and dynamics during radioactive waste disposal

  Giménez del Rey, F. J., Mijnendonckx, K. & Peeters, E., 13 Nov 2020. 1 p.

  Research output: Unpublished contribution to conference › Poster

  File

  • Boom clay
  • natural barrier
  • porewater
  • biosphere
  1 Downloads (Pure)

• Phosphorylation of the acyl-CoA binding pocket of the FadR transcription regulator in Sulfolobus acidocaldarius

  Maklad, H. R., Gutierrez, G. J., Esser, D., Siebers, B. & Peeters, E., Aug 2020, In : Biochimie. 175, p. 120-124 5 p.

  Research output: Contribution to journal › Article

  • Sulfolobus acidocaldarius
  • Phosphorylation
  • Acyl Coenzyme A
  • Transcription
  • Chromosomes
  1 Citation (Scopus)

• Putting an end to the Pseudomonas aeruginosa IQS controversy

  Cornelis, P., Feb 2020, In : MicrobiologyOpen. 9, 2, e962.

  Research output: Contribution to journal › Article

  • aeruginaldehyde
  • pyochelin
  • Thiazoles
  • Siderophores
  • Pseudomonas aeruginosa
  14 Citations (Scopus)

• Tackling Pseudomonas aeruginosa Virulence by Mulinane-Like Diterpenoids from Azorella atacamensis

  Azuama, O. C., Ortiz, S., Quirós-Guerrero, L., Bouffartigues, E., Tortuel, D., Maillot, O., Feuilloley, M., Cornelis, P., Lesouhaitier, O., Grougnet, R., Boutefnouchet, S., Wolfender, J-L., Chevalier, S. & Tahrioui, A., 2 Dec 2020, In : Biomolecules. 10, 12, p. 1-25 25 p., 1626.

  Research output: Contribution to journal › Article

  • mulinane
  • Apiaceae
  • Diterpenes
  • Virulence Factors
  • Pseudomonas aeruginosa
  3 Citations (Scopus)

• The events that may contribute to subgingival dysbiosis: a focus on the interplay between iron, sulfide and oxygen

  Chathoth, K., Martin, B., Cornelis, P., Yvenou, S., Bonnaure-Mallet, M. & Baysse, C., 1 Jul 2020, In : FEMS Microbiology Letters. 367, 14

  Research output: Contribution to journal › Article

  • Sulfides
  • Dysbiosis
  • Microbiota
  • Iron
  • Oxygen
  1 Citation (Scopus)

• The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX

  Bouffartigues, E., Si Hadj Mohand, I., Maillot, O., Tortuel, D., Omnes, J., David, A., Tahrioui, A., Duchesne, R., Azuama, C. O., Nusser, M., Brenner-Weiss, G., Bazire, A., Connil, N., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A., Cornelis, P. & Chevalier, S., 21 Oct 2020, In : Frontiers in Microbiology. 11, 14 p., 579495.

  Research output: Contribution to journal › Article

  • Sigma Factor
  • Operon
  • Pseudomonas aeruginosa
  • Heat-Shock Response
  • Temperature
  2 Citations (Scopus)

• Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa

  Yang, W., Wei, Q., Tong, Q., Cui, K., He, G., Lin, L., Ma, L. Z., Cornelis, P. & Wang, Y., 17 Dec 2020, In : Frontiers in Microbiology. 11, p. 517462 517462.

  Research output: Contribution to journal › Article

  • tanreqing
  • Quorum Sensing
  • Chinese Traditional Medicine
  • Pseudomonas aeruginosa
  • Regulon
• 2019

  A script for initiating molecular biology studies with non-conventional yeasts based on Saccharomycopsis schoenii

  Kayacan, Y., Griffiths, A. M. & Wendland, J., Dec 2019, In : Microbiological Research. 229, 126342.

  Research output: Contribution to journal › Article

  • Saccharomycopsis
  • Molecular Biology
  • Yeasts
  • Saccharomyces cerevisiae
  • Genetic Engineering
  1 Citation (Scopus)

• A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

  Wang, K., Sybers, D., Maklad, H. R., Lemmens, L., Lewyllie, C., Zhou, X., Schult, F., Bräsen, C., Siebers, B., Valegård, K., Lindås, A-C. & Peeters, E., 4 Apr 2019, In : Nature Communications. 10, 1, 16 p., 1542.

  Research output: Contribution to journal › Article

  • Sulfolobus acidocaldarius
  • fatty acids
  • Metabolism
  • metabolism
  • organisms
  14 Citations (Scopus)

• Characterization of a bacterial-like FadR transcription factor involved in fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

  Sybers, D., Lemmens, L., Wang, K., Zhou, X., Shen, L., Brasen, C., Siebers, B., Lindas, A-C. & Peeters, E., 1 Feb 2019.

  Research output: Unpublished contribution to conference › Unpublished abstract

• Competitive Repression of the artPIQM Operon for Arginine and Ornithine Transport by Arginine Repressor and Leucine-Responsive Regulatory Protein in Escherichia coli

  Torres Montaguth, O. E., Bervoets, I., Peeters, E. & Charlier, D., Jul 2019, In : Frontiers in Microbiology. 10, JULY, 14 p., 1563.

  Research output: Contribution to journal › Article

  • Leucine-Responsive Regulatory Protein
  • Ornithine
  • Operon
  • Arginine
  • Escherichia coli
  5 Citations (Scopus)

• Diversity, versatility and complexity of bacterial gene regulation mechanisms: opportunities and drawbacks for applications in synthetic biology

  Bervoets, I. & Charlier, D., 1 May 2019, In : FEMS Microbiology Reviews. 43, 3, p. 304-339 36 p.

  Research output: Contribution to journal › Scientific review

  Open Access

  File

  • Synthetic Biology
  • Bacterial Genes
  • Operon
  • Gene Expression Regulation
  • Virulence
  32 Citations (Scopus)

  81 Downloads (Pure)

• Editorial overview: Tissue, cell and pathway engineering

  Peeters, E. & De Mey, M., Oct 2019, In : Current Opinion in Biotechnology. 59, p. iii-v 3 p.

  Research output: Contribution to journal › Editorial

• Extracellular DNA release, quorum sensing, and PrrF1/F2 small RNAs are key players in Pseudomonas aeruginosa tobramycin-enhanced biofilm formation

  Tahrioui, A., Duchesne, R., Bouffartigues, E., Rodrigues, S., Maillot, O., Tortuel, D., Hardouin, J., Taupin, L., Groleau, M-C., Dufour, A., Déziel, E., Brenner-Weiss, G., Feuilloley, M., Orange, N., Lesouhaitier, O., Cornelis, P. & Chevalier, S., 1 Dec 2019, In : npj biofilms and microbiomes. 5, 1, 15.

  Research output: Contribution to journal › Article

  • Quorum Sensing
  • Tobramycin
  • Biofilms
  • Pseudomonas aeruginosa
  • RNA
  14 Citations (Scopus)

• Extracytoplasmic function sigma factors in Pseudomonas aeruginosa

  Chevalier, S., Bouffartigues, E., Bazire, A., Tahrioui, A., Duchesne, R., Tortuel, D., Maillot, O., Clamens, T., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A. & Cornelis, P., Jul 2019, In : Biochimica et Biophysica Acta Gene Regulatory Mechanisms. 1862, 7, p. 706-721 16 p.

  Research output: Contribution to journal › Scientific review

  • Sigma Factor
  • Pseudomonas aeruginosa
  • Regulon
  • Cell Wall
  • Iron
  21 Citations (Scopus)

• Fatty acid degradation in Sulfolobus acidocaldarius

  Zhou, X., Schmerling, C., Sybers, D., Wang, K., Peeters, E., Lindås, A-C., Brasen, C. & Siebers, B., Mar 2019.

  Research output: Unpublished contribution to conference › Poster

• Fatty acid degradation in Sulfolobus acidocaldarius

  Zhou, X., Christian, S., Sybers, D., Wang, K., Peeters, E., Lindås, A-C., Brasen, C. & Siebers, B., Mar 2019, (Submitted).

  Research output: Unpublished contribution to conference › Unpublished abstract

• Genetic Tool Development For a Thermoacidophilic Archaeon

  Sybers, D. & Peeters, E., 2 Sep 2019.

  Research output: Unpublished contribution to conference › Poster

• Genetic Tool Development For Sulfolobus acidocaldarius, a Thermoacidophilic Archaeon

  Sybers, D., Swinnen, J. & Peeters, E., 18 Oct 2019, (Unpublished).

  Research output: Unpublished contribution to conference › Poster

• Genetic tool development for the hyperthermoacidophilic archaeon Sulfolobus acidocaldarius

  Sybers, D. & Peeters, E., 3 Jun 2019.

  Research output: Unpublished contribution to conference › Poster

• Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

  Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Houdt, R. V., 18 Jan 2019, In : Genes. 10, 1, 21 p., 63.

  Research output: Contribution to journal › Article

  • Cupriavidus
  • Platinum
  • Metals
  • Cytochromes a
  • Genome
  4 Citations (Scopus)

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors

  Baes, R., Lemmens, L. & Peeters, E., 21 Jul 2019.

  Research output: Unpublished contribution to conference › Poster

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors (BSM)

  Baes, R., Lemmens, L. & Peeters, E., 18 Oct 2019.

  Research output: Unpublished contribution to conference › Poster

• Heat shock response in the thermoacidophilic archaeon Sulfolobus acidocaldarius: transcriptional regulation of heat shock proteins and transcription factors (GRS)

  Baes, R., Lemmens, L. & Peeters, E., 20 Jul 2019.

  Research output: Unpublished contribution to conference › Poster

• Host Peptidic Hormones Affecting Bacterial Biofilm Formation and Virulence

  Lesouhaitier, O., Clamens, T., Rosay, T., Desriac, F., Louis, M., Rodrigues, S., Gannesen, A., Plakunov, V. K., Bouffartigues, E., Tahrioui, A., Bazire, A., Dufour, A., Cornelis, P., Chevalier, S. & Feuilloley, M. G. J., 2019, In : Journal of Innate Immunity. 11, 3, p. 227-241 15 p.

  Research output: Contribution to journal › Scientific review

  • Biofilms
  • Virulence
  • Hormones
  • Communication
  • Bacterial Physiological Phenomena
  10 Citations (Scopus)

• Mechanical, physical and chemical characterisation of mycelium-based composites with different types of lignocellulosic substrates

  Elsacker, E., Vandelook, S., Brancart, J., Peeters, E. & De Laet, L., 22 Jul 2019, In : PLoS ONE. 14, 7, 20 p., e0213954.

  Research output: Contribution to journal › Article

  Open Access

  File

  • Mycelium
  • Flax
  • Thermal Conductivity
  • Wool
  • Cannabis
  16 Citations (Scopus)

  54 Downloads (Pure)

• Mechanical, physical and chemical characterization of mycelium-based composites with different types of lignocellulosic substrates

  Vanden Elsacker, E., Vandelook, S., Brancart, J., Peeters, E. & De Laet, L., 7 Mar 2019, Biorxiv, 24 p.

  Research output: Working paper

• Mycelium-based materials at the dawn of the Anthropocene

  Vanden Elsacker, E., De Laet, L. & Peeters, E., Jul 2019, Structures and Architecture - Bridging the Gap and Crossing Borders: Proceedings of the Fourth International Conference on Structures and Architecture (ICSA 2019). CRC Press, Taylor & Francis, Boca Raton, p. 1083-1090

  Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Research

  Open Access
  1 Citation (Scopus)

• Non-monotonic auto-regulation in single gene circuits

  Descheemaeker, L., Peeters, E. & de Buyl, S., 2 May 2019, In : PLoS ONE. 14, 5, 18 p., e0216089.

  Research output: Contribution to journal › Article

  • autoregulation
  • gene regulatory networks
  • Gene Regulatory Networks
  • oscillation
  • Genes

• Overexpression of RAD51 Enables PCR-Based Gene Targeting in Lager Yeast

  Bernardi, B., Kayacan, Y., Akan, M. & Wendland, J., 5 Jul 2019, In : Microorganisms. 7, 7, 192.

  Research output: Contribution to journal › Article
  4 Citations (Scopus)

• Regulation of arginine biosynthesis, catabolism and transport in Escherichia coli

  Charlier, D. & Bervoets, I., Aug 2019, In : Amino Acids. 51, 8, p. 1103-1127 25 p.

  Research output: Contribution to journal › Scientific review

  • Biosynthesis
  • Escherichia coli
  • Arginine
  • Nitrogen
  • Genes
  9 Citations (Scopus)

• Spontaneous mutation in the AgrRS two-component regulatory system of Cupriavidus metallidurans results in enhanced silver resistance

  Ali, M. M., Mijnendonckx, K., Provoost, A., Janssen, P., Mergeay, M., Leys, N., Charlier, D., Monsieurs, P. & Van Houdt, R., Nov 2019, In : Metallomics. 11, 11, p. 1912-1924 13 p.

  Research output: Contribution to journal › Article

  Open Access

  • Cupriavidus
  • Silver
  • Mutation
  • Proteins
  • Silver compounds
  3 Citations (Scopus)

• Structure of the Prx6-subfamily 1-Cys type peroxiredoxin from Sulfolobus islandicus

  Stroobants, S., Van Molle, I., Saidi, Q., Jonckheere, K., Maes, D. & Peeters, E., 1 Jun 2019, In : Acta Crystallographica Section F - Structural Biology Communications. F75, 6, p. 428-434

  Research output: Contribution to journal › Article

• Transcription Regulators in Archaea: Homologies and Differences with Bacterial Regulators

  Lemmens, L., Maklad, H. R., Bervoets, I. & Peeters, E., 20 Sep 2019, In : Journal of Molecular Biology. 431, 20, p. 4132-4146 15 p.

  Research output: Contribution to journal › Scientific review

  • Archaea
  • Transcription Factors
  • Ligands
  • Horizontal Gene Transfer
  • Gene Expression Regulation
  14 Citations (Scopus)

• Transcription regulators in thermoacidophilic archaea belonging to the genus Sulfolobus: homologies and differences with bacterial regulators

  Lemmens, L., Maklad, H. R. M. A., Sybers, D., Bervoets, I. & Peeters, E., 1 Jun 2019, (Submitted).

  Research output: Unpublished contribution to conference › Unpublished abstract

• Unleashing the biocontrol potential of predator yeasts of the Saccharomycopsis clade

  Kayacan, Y., Wendland, J. & Willaert, R., 3 Jun 2019.

  Research output: Unpublished contribution to conference › Poster

  • Saccharomycopsis
  • biological control
  • predators
  • yeasts
  • plant pathogens

• YtrASa, a GntR-family transcription factor, represses two genetic loci encoding membrane proteins in Sulfolobus acidocaldarius

  Lemmens, L., Tilleman, L., De Koning, E., Valegård, K., Lindås, A-C., Van Nieuwerburgh, F., Maes, D. & Peeters, E., 10 Sep 2019, In : Frontiers in Microbiology. 10, 2084, 15 p., 2084.

  Research output: Contribution to journal › Article

  Open Access

  • Sulfolobus acidocaldarius
  • Genetic Loci
  • Regulon
  • Membrane Proteins
  • Transcription Factors
  1 Citation (Scopus)