Microbiology

2021

Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA

Garcia-Rodriguez, G., Charlier, D., Wilmaerts, D., Michiels, J. & Loris, R., 9 Jul 2021, In : Nucleic Acids Research. 49, 12, p. 7164-7178 15 p.

Research output: Contribution to journal › Article

Open Access

File

16 Downloads (Pure)

Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms

Martinez-Liu, L., Hernandez-Guerrero, R., Rivera-Gomez, N., Martinez-Nuñez, M. A., Escobar-Turriza, P., Peeters, E. & Perez-Rueda, E., 2 Jul 2021, In : PLOS ONE. 16, 7, 13 p., e0254025.

Research output: Contribution to journal › Article

Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi

Lofgren, L. A., Nguyen, N. H., Vilgalys, R., Ruytinx, J., Liao, H-L., Branco, S., Kuo, A., LaButti, K., Lipzen, A., Andreopoulos, W., Pangilinan, J., Riley, R., Hundley, H., Na, H., Barry, K., Grigoriev, I. V., Stajich, J. E. & Kennedy, P. G., Apr 2021, In : New Phytologist. 230, 2, p. 774-792 19 p.

Research output: Contribution to journal › Article

3 Citations (Scopus)

Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen

Guevarra, R. B., Magez, S., Peeters, E., Chung, M. S., Kim, K. H. & Radwanska, M., Jan 2021, In : PLOS ONE. 16, 1, 27 p., e0239792.

Research output: Contribution to journal › Article

2 Citations (Scopus)

Disentangling the role of ectomycorrhizal fungi in plant nutrient acquisition along a Zn gradient using X-ray imaging

Zhang, K., Tappero, R., Ruytinx, J., Branco, S. & Liao, H-L., 8 Aug 2021, In : Science of the Total Environment. 801, 149481.

Research output: Contribution to journal › Article

Entropic pressure controls olgomerization of Vibrio cholerae ParD2 antitoxin

Garcia Rodriguez, G., Girardin, Y., Volkov, O., Singh, R. K., Muruganandam, G., Van Dyck, J., Sobott, F., Versées, W., Charlier, D. & Loris, R., 18 Jun 2021, In : Acta Crystallographica Section D: Structural Biology (2016- ). 77, Pt 7, p. 904-920 17 p.

Research output: Contribution to journal › Article

Open Access

File

7 Downloads (Pure)

From Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization

Soldan, R., Sanguankiattichai, N., Bach-Pages, M., Bervoets, I., Huang, W. E. & Preston, G. M., Apr 2021, In : Environmental Microbiology. 23, 4, p. 2070-2085 16 p.

Research output: Contribution to journal › Article

2 Citations (Scopus)

The biology of thermoacidophilic archaea from the order Sulfolobales

Lewis, A. M., Recalde, A., Bräsen, C., Counts, J. A., Nussbaum, P., Bost, J., Schocke, L., Shen, L., Willard, D. J., Quax, T. E. F., Peeters, E., Siebers, B., Albers, S-V. & Kelly, R. M., 1 Jul 2021, In : FEMS Microbiology Reviews. 45, 4

Research output: Contribution to journal › Article

3 Citations (Scopus)

2020

A comprehensive framework for the production of mycelium-based lignocellulosic composites

Elsacker, E., Vandelook, S., Van Wylick, A., Ruytinx, J., De Laet, L. & Peeters, E., 10 Jul 2020, In : Science of the Total Environment. 725, 138431.

Research output: Contribution to journal › Article

Open Access

File

11 Citations (Scopus)

243 Downloads (Pure)

Activation of the Cell Wall Stress Response in Pseudomonas aeruginosa Infected by a Pf4 Phage Variant

Tortuel, D., Tahrioui, A., Rodrigues, S., Cambronel, M., Boukerb, A. M., Maillot, O., Verdon, J., Bere, E., Nusser, M., Brenner-Weiss, G., David, A., Azuama, O. C., Feuilloley, M. G. J., Orange, N., Lesouhaitier, O., Cornelis, P., Chevalier, S. & Bouffartigues, E., Nov 2020, In : Microorganisms. 8, 11, p. 1-20 20 p., 1700.

Research output: Contribution to journal › Article

Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius

Baes, R., Lemmens, L., Mignon, K., Carlier, M. & Peeters, E., 19 Jun 2020, In : Extremophiles. 24, p. 681–692 12 p.

Research output: Contribution to journal › Article

DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance

Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In : Frontiers in Microbiology. 11, 17 p., 1635.

Research output: Contribution to journal › Article

4 Citations (Scopus)

Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation

Bazzicalupo, A. L., Ruytinx, J., Ke, Y-H., Coninx, L., Colpaert, J. V., Nguyen, N. H., Vilgalys, R. & Branco, S., 27 Oct 2020, In : Molecular Ecology. 29, 21, p. 4157-4169 13 p.

Research output: Contribution to journal › Article

6 Citations (Scopus)

Membrane-Interactive Compounds From Pistacia lentiscus L. Thwart Pseudomonas aeruginosa Virulence

Tahrioui, A., Ortiz, S., Azuama, O. C., Bouffartigues, E., Benalia, N., Tortuel, D., Maillot, O., Chemat, S., Kritsanida, M., Feuilloley, M., Orange, N., Michel, S., Lesouhaitier, O., Cornelis, P., Grougnet, R., Boutefnouchet, S. & Chevalier, S., 26 May 2020, In : Frontiers in Microbiology. 11, 1068.

Research output: Contribution to journal › Article

11 Citations (Scopus)

Phosphorylation of the acyl-CoA binding pocket of the FadR transcription regulator in Sulfolobus acidocaldarius

Maklad, H. R., Gutierrez, G. J., Esser, D., Siebers, B. & Peeters, E., Aug 2020, In : Biochimie. 175, p. 120-124 5 p.

Research output: Contribution to journal › Article

2 Citations (Scopus)

Putting an end to the Pseudomonas aeruginosa IQS controversy

Cornelis, P., Feb 2020, In : MicrobiologyOpen. 9, 2, e962.

Research output: Contribution to journal › Article

16 Citations (Scopus)

Tackling Pseudomonas aeruginosa Virulence by Mulinane-Like Diterpenoids from Azorella atacamensis

Azuama, O. C., Ortiz, S., Quirós-Guerrero, L., Bouffartigues, E., Tortuel, D., Maillot, O., Feuilloley, M., Cornelis, P., Lesouhaitier, O., Grougnet, R., Boutefnouchet, S., Wolfender, J-L., Chevalier, S. & Tahrioui, A., 2 Dec 2020, In : Biomolecules. 10, 12, p. 1-25 25 p., 1626.

Research output: Contribution to journal › Article

4 Citations (Scopus)

The events that may contribute to subgingival dysbiosis: a focus on the interplay between iron, sulfide and oxygen

Chathoth, K., Martin, B., Cornelis, P., Yvenou, S., Bonnaure-Mallet, M. & Baysse, C., 1 Jul 2020, In : FEMS Microbiology Letters. 367, 14

Research output: Contribution to journal › Article

1 Citation (Scopus)

The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX

Bouffartigues, E., Si Hadj Mohand, I., Maillot, O., Tortuel, D., Omnes, J., David, A., Tahrioui, A., Duchesne, R., Azuama, C. O., Nusser, M., Brenner-Weiss, G., Bazire, A., Connil, N., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A., Cornelis, P. & Chevalier, S., 21 Oct 2020, In : Frontiers in Microbiology. 11, 14 p., 579495.

Research output: Contribution to journal › Article

3 Citations (Scopus)

Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa

Yang, W., Wei, Q., Tong, Q., Cui, K., He, G., Lin, L., Ma, L. Z., Cornelis, P. & Wang, Y., 17 Dec 2020, In : Frontiers in Microbiology. 11, 18 p., 517462.

Research output: Contribution to journal › Article

1 Citation (Scopus)

2019

A script for initiating molecular biology studies with non-conventional yeasts based on Saccharomycopsis schoenii

Kayacan, Y., Griffiths, A. M. & Wendland, J., Dec 2019, In : Microbiological Research. 229, 126342.

Research output: Contribution to journal › Article

2 Citations (Scopus)

A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius

Wang, K., Sybers, D., Maklad, H. R., Lemmens, L., Lewyllie, C., Zhou, X., Schult, F., Bräsen, C., Siebers, B., Valegård, K., Lindås, A-C. & Peeters, E., 4 Apr 2019, In : Nature Communications. 10, 1, 16 p., 1542.

Research output: Contribution to journal › Article

Open Access

17 Citations (Scopus)

Competitive Repression of the artPIQM Operon for Arginine and Ornithine Transport by Arginine Repressor and Leucine-Responsive Regulatory Protein in Escherichia coli

Torres Montaguth, O. E., Bervoets, I., Peeters, E. & Charlier, D., Jul 2019, In : Frontiers in Microbiology. 10, JULY, 14 p., 1563.

Research output: Contribution to journal › Article

Open Access

7 Citations (Scopus)

Extracellular DNA release, quorum sensing, and PrrF1/F2 small RNAs are key players in Pseudomonas aeruginosa tobramycin-enhanced biofilm formation

Tahrioui, A., Duchesne, R., Bouffartigues, E., Rodrigues, S., Maillot, O., Tortuel, D., Hardouin, J., Taupin, L., Groleau, M-C., Dufour, A., Déziel, E., Brenner-Weiss, G., Feuilloley, M., Orange, N., Lesouhaitier, O., Cornelis, P. & Chevalier, S., 1 Dec 2019, In : npj biofilms and microbiomes. 5, 1, 15.

Research output: Contribution to journal › Article

Open Access

17 Citations (Scopus)

Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans

Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Houdt, R. V., 18 Jan 2019, In : Genes. 10, 1, 21 p., 63.

Research output: Contribution to journal › Article

Open Access

5 Citations (Scopus)

Mechanical, physical and chemical characterisation of mycelium-based composites with different types of lignocellulosic substrates

Elsacker, E., Vandelook, S., Brancart, J., Peeters, E. & De Laet, L., 22 Jul 2019, In : PLoS ONE. 14, 7, 20 p., e0213954.

Research output: Contribution to journal › Article

Open Access

File

24 Citations (Scopus)

141 Downloads (Pure)

Non-monotonic auto-regulation in single gene circuits

Descheemaeker, L., Peeters, E. & de Buyl, S., 2 May 2019, In : PLoS ONE. 14, 5, 18 p., e0216089.

Research output: Contribution to journal › Article

Open Access

Overexpression of RAD51 Enables PCR-Based Gene Targeting in Lager Yeast

Bernardi, B., Kayacan, Y., Akan, M. & Wendland, J., 5 Jul 2019, In : Microorganisms. 7, 7, 192.

Research output: Contribution to journal › Article

Open Access

4 Citations (Scopus)

Spontaneous mutation in the AgrRS two-component regulatory system of Cupriavidus metallidurans results in enhanced silver resistance

Ali, M. M., Mijnendonckx, K., Provoost, A., Janssen, P., Mergeay, M., Leys, N., Charlier, D., Monsieurs, P. & Van Houdt, R., Nov 2019, In : Metallomics. 11, 11, p. 1912-1924 13 p.

Research output: Contribution to journal › Article

Open Access

6 Citations (Scopus)

Structure of the Prx6-subfamily 1-Cys type peroxiredoxin from Sulfolobus islandicus

Stroobants, S., Van Molle, I., Saidi, Q., Jonckheere, K., Maes, D. & Peeters, E., 1 Jun 2019, In : Acta Crystallographica Section F - Structural Biology Communications. F75, 6, p. 428-434

Research output: Contribution to journal › Article

YtrASa, a GntR-family transcription factor, represses two genetic loci encoding membrane proteins in Sulfolobus acidocaldarius

Lemmens, L., Tilleman, L., De Koning, E., Valegård, K., Lindås, A-C., Van Nieuwerburgh, F., Maes, D. & Peeters, E., 10 Sep 2019, In : Frontiers in Microbiology. 10, 2084, 15 p., 2084.

Research output: Contribution to journal › Article

Open Access

2 Citations (Scopus)

2018

Adding Flavor to Beverages with Non-Conventional Yeasts

Ravasio, D., Carlin, S., Boekhout, T., Groenewald, M., Vrhovsek, U., Walther, A. & Wendland, J., 26 Feb 2018, In : Fermentation. 4, 1, 16 p., 15.

Research output: Contribution to journal › Article

Open Access

File

19 Citations (Scopus)

263 Downloads (Pure)

A novel and versatile dual fluorescent reporter tool for the study of gene expression and regulation in multi- and single copy number

Bervoets, I. & Charlier, D., 5 Feb 2018, In : Gene. 642, p. 474-482 9 p.

Research output: Contribution to journal › Article

3 Citations (Scopus)

A sigma factor toolbox for orthogonal gene expression in Escherichia coli

Bervoets, I., Van Brempt, M., Van Nerom, K., Van Hove, B., Maertens, J., De Mey, M. & Charlier, D., 28 Feb 2018, In : Nucleic Acids Research. 46, 4, p. 2133-2144 12 p.

Research output: Contribution to journal › Article

Open Access

33 Citations (Scopus)

Community-led comparative genomic and phenotypic analysis of the aquaculture pathogen Pseudomonas baetica a390T sequenced by Ion semiconductor and Nanopore technologies

Beaton, A., Lood, C., Cunningham-Oakes, E., MacFadyen, A., Mullins, A. J., Bestawy, W. E., Botelho, J., Chevalier, S., Coleman, S., Dalzell, C., Dolan, S. K., Faccenda, A., Ghequire, M. G. K., Higgins, S., Kutschera, A., Murray, J., Redway, M., Salih, T., da Silva, A. C., Smith, B. A. & 8 others, Smits, N., Thomson, R., Woodcock, S., Welch, M., Cornelis, P., Lavigne, R., van Noort, V. & Tucker, N. P., May 2018, In : FEMS Microbiology Letters. 365, 9, 12 p.

Research output: Contribution to journal › Article

11 Citations (Scopus)

Differential protein-DNA contacts for activation and repression by ArgP, a LysR-type (LTTR) transcriptional regulator in Escherichia coli

Nguyen Le Minh, P., Velázquez Ruiz, C., Vandermeeren, S., Abwoyo, P., Bervoets, I. & Charlier, D., Jan 2018, In : Microbiological Research. 206, p. 141-158 18 p.

Research output: Contribution to journal › Article

7 Citations (Scopus)

Editorial: Role of Iron in Bacterial Pathogenesis

Zughaier, S. M. & Cornelis, P., 16 Oct 2018, In : Frontiers in Cellular and Infection Microbiology. 8, 1 p., 344.

Research output: Contribution to journal › Article

Open Access

11 Citations (Scopus)

Expansion of a telomeric FLO/ALS-like Sequence gene family in Saccharomycopsis fermentans

Bernardi, B., Kayacan, Y. & Wendland, J., 13 Nov 2018, In : Frontiers in Genetics. 9, 536, 13 p.

Research output: Contribution to journal › Article

Open Access

Intrapulmonary percussive ventilation improves lung function in cystic fibrosis patients chronically colonized with Pseudomonas aeruginosa: a pilot cross-over study

Dingemans, J., Eyns, H., Willekens, J., Monsieurs, P., Van Houdt, R., Cornelis, P., Malfroot, A. & Crabbé, A., Jun 2018, In : European Journal of Clinical Microbiology and Infectious Diseases. 37, 6, p. 1143-1151 9 p.

Research output: Contribution to journal › Article

8 Citations (Scopus)

Regulation of carbamoylphosphate synthesis in Escherichia coli: an amazing metabolite at the crossroad of arginine and pyrimidine biosynthesis

Charlier, D., Nguyen Le Minh, P. & Roovers, M., 20 Sep 2018, In : Amino Acids. 50, 12, p. 1647–1661 15 p.

Research output: Contribution to journal › Article

Open Access

11 Citations (Scopus)

Structural snapshots of OxyR reveal the peroxidatic mechanism of H2O2 sensing.

Pedre, B., Young, D., Charlier, D., Mourenza, Á., Rosado, L., Marcos-Pascual, L., Wahni, K., Martens, E., G, D. L. R. A., Belousov, VV., Mateos, LM. & Messens, J., 11 Dec 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 50, p. E11623-E11632

Research output: Contribution to journal › Article

Open Access

20 Citations (Scopus)

The absence of SigX results in impaired carbon metabolism and membrane fluidity in Pseudomonas aeruginosa

Fléchard, M., Duchesne, R., Tahrioui, A., Bouffartigues, E., Depayras, S., Hardouin, J., Lagy, C., Maillot, O., Tortuel, D., Azuama, C. O., Clamens, T., Duclairoir-Poc, C., Catel-Ferreira, M., Gicquel, G., Feuilloley, M. G. J., Lesouhaitier, O., Heipieper, H. J., Groleau, M-C., Déziel, É., Cornelis, P. & 1 others, Chevalier, S., 21 Nov 2018, In : Scientific Reports - Nature. 8, 1, 13 p., 17212.

Research output: Contribution to journal › Article

Open Access

10 Citations (Scopus)

The mycoparasitic yeast Saccharomycopsis schoenii predates and kills multi-drug resistant Candida auris

Junker, K., Bravo Ruiz, G., Lorenz, A., Walker, L., Gow, N. A. R. & Wendland, J., 8 Oct 2018, In : Scientific Reports - Nature. 8, 1, p. 14959 5 p., 14959.

Research output: Contribution to journal › Article

Open Access

9 Citations (Scopus)

2017

An Arf-GAP promotes endocytosis and hyphal growth of Ashbya gossypii

Oscarsson, T., Walther, A., Lengeler, K. B. & Wendland, J., 29 Dec 2017, In : FEMS Microbiology Letters. 364, 24, 8 p., fnx240.

Research output: Contribution to journal › Article

3 Citations (Scopus)

A novel, highly conserved metallothionein family in basidiomycete fungi and characterization of two representative SlMTa and SlMTb genes in the ectomycorrhizal fungus Suillus luteus: A novel metallothionein family in basidiomycetes

Nguyen, H., Rineau, F., Vangronsveld, J., Cuypers, A., Colpaert, J. V. & Ruytinx, J., Apr 2017, In : Environmental Microbiology. 19, 7, p. 2577-2587 11 p.

Research output: Contribution to journal › Article

14 Citations (Scopus)

Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes

Rineau, F., Lmalem, H., Ahren, D., Shah, F., Johansson, T., Coninx, L., Ruytinx, J., Nguyen, H., Grigoriev, I., Kuo, A., Kohler, A., Morin, E., Vangronsveld, J., Martin, F. L. & Colpaert, J. V., 2017, In : Mycorrhiza. 27, 4, p. 383-396 14 p.

Research output: Contribution to journal › Article

9 Citations (Scopus)

Differential stress response of Saccharomyces hybrids revealed by monitoring Hsp104 aggregation and disaggregation

Kempf, C., Lengeler, K. & Wendland, J., Jul 2017, In : Microbiological Research. 200, p. 53-63 11 p.

Research output: Contribution to journal › Article

7 Citations (Scopus)

DNA-Interacting Characteristics of the Archaeal Rudiviral Protein SIRV2_Gp1

Peeters, E., Boonen, M., Rollie, C., Willaert, R., Voet, M., F. White, M., Prangishvili, D., Lavigne, R. & E.F. Quax, T., 18 Jul 2017, In : Viruses. 9, 7, p. 1-13 13 p., 190.

Research output: Contribution to journal › Article

Open Access

File

8 Citations (Scopus)

120 Downloads (Pure)

Draft Genome Sequence of Saccharomycopsis fodiens CBS 8332, a Necrotrophic Mycoparasite with Biocontrol Potential

Junker, K., Hesselbart, A. & Wendland, J., 16 Nov 2017, In : Genome Announcements. 5, 46, 2 p., e01278-17.

Research output: Contribution to journal › Article

Open Access

5 Citations (Scopus)

Identification, evolution and functional characterization of two Zn CDF-family transporters of the ectomycorrhizal fungus Suillus luteus: Identification and characterization of two Zn transporters

Ruytinx, J., Coninx, L., Nguyen, H., Smisdom, N., Morin, E., Kohler, A., Cuypers, A. & Colpaert, J. V., May 2017, In : Environmental Microbiology Reports. 9, 4, p. 419-427 9 p.

Research output: Contribution to journal › Article

11 Citations (Scopus)

Microbiology

Research output

Search results