Projects per year
Organisation profile
Organisation profile
The Research Group of Microbiology performs research in the fields of molecular microbiology and microbial biotechnology. Research aims to contribute to a better understanding of the lifestyle and physiology of a variety of microorganisms (archaea, bacteria, fungi, mycorrhiza), with a longstanding expertise in the study of extremophiles. Molecular mechanisms underlying the response of microorganisms to changing environmental conditions (nutritional conditions or stress) are unraveled with a focus on gene regulation. Fundamental insights are used in the development of biotechnological applications in the context of a transition to a more sustainable biobased economy and industry.
Keywords
- Genetics
- Protein-DNA interactions
- Pyrimidines
- Molecular Biology
- Archaea
- Arginine
- Structure-Function Relationships
- Psychrophiles
- Microbiology
- Allostery
- Procaryotes
- Thermophiles
- Biotechnology
- Transcriptional regulation
Fingerprint
Collaborations and top research areas from the last five years
Profiles
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Rani Baes
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - External employee
- Microbiology
Person: Researcher
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Indra Bervoets
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - Technical Expert
- Microbiology
Person: Researcher, Administrative/technical staff
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Veerke De Kock
- Vrije Universiteit Brussel
- Department of Bio-engineering Sciences - Pedagogical employee, Unpaid employee
- Faculty of Sciences and Bioengineering Sciences
- Microbiology
Person: Researcher, PhD
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FWOTM1286: Epigenetic regulation by acetylation of chromatin-organizing proteins in the thermoacidophilic Crenarchaeon Sulfolobus acidocaldarius
1/11/25 → 31/10/28
Project: Fundamental
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FWOTM1311: Color is alive: enhancing adoption and user experience of Fungal Living Materials through color innovation
Verstuyft, A., Peeters, E., Vanden Elsacker, E. & Van den Brande, N.
1/11/25 → 31/10/29
Project: Fundamental
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FWOIRI16: Industrial Biotechnology Innovator and Synthetic Biology Accelerator – Flanders (IBISBA-FL)
1/01/25 → 31/12/28
Project: Fundamental
Research output
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Arbuscular Mycorrhizal Fungi Improve Rice Production in Zinc‐Amended Soils by Altering Zinc Transport and Translocation Routes
Zhang, Y., Gao, Y., Vandeputte, D., Leermakers, M. & Ruytinx, J., 2025, In: Plant, Cell & Environment. 48, 7, p. 5559-5571 13 p., PCE15543.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus)55 Downloads (Pure) -
Bio-prokaryotic-VII: Epigenetic regulation of stress response in the Crenarchaeal model Sulfolobus acidocaldarius
Baes, R., De Kock, V., Couturier, M., De Vos, M., Dame, R. & Peeters, E., 16 Sept 2025, (Accepted/In press). 1 p.Research output: Unpublished contribution to conference › Unpublished abstract
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Comparative transcriptomics uncovers plant and fungal genetic determinants of mycorrhizal compatibility
Marqués-Gálvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F. M., Grigoriev, I. V., Veneault-Fourrey, C. & Kohler, A., 2025, Biorxiv, p. 1-46, 46 p.Research output: Working paper › Preprint
Open Access -
Comparative transcriptomics uncovers poplar and fungal genetic determinants of ectomycorrhizal compatibility
Marqués-Gálvez, J. E., de Freitas Pereira, M., Nehls, U., Ruytinx, J., Barry, K., Peter, M., Martin, F., Grigoriev, I. V., Veneault-Fourrey, C. & Kohler, A., Jul 2025, In: The Plant Journal. 123, 2, p. 1-24 24 p., e70352.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Development and characterisation of pNarsenic: a naringenin-inducible biosensor for arsenic in Escherichia coli
Crabbe, V., Unal, E., Graeve, S. D., Guerra, D. G., Peeters, T., Buyl, S. D., Peeters, E. & Bervoets, I., 25 Sept 2025.Research output: Working paper › Preprint
Activities
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FWO PhD fellowship - research proposal: Model-driven design and in vivo implementation of a multi-level dynamic pathway regulation combining transcriptional and post-transcriptional regulation
Martain Dagnelie (Recipient), Sophie de Buyl (Supervisor) & Eveline Peeters (Supervisor)
3 Mar 2025Activity: Other › Written proposal
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mSystems (Journal)
Rani Baes (Peer reviewer)
2025Activity: Publication peer-review and editorial work › Publication peer-review
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Agence Nationale de La Recherche (External organisation)
Rani Baes (Reviewer)
2025Activity: Membership › Work on advisory panel to industry or government or non-government organisation
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Biology and Physics of Prokaryotic Chromosomes VII
Rani Baes (Participant)
16 Sept 2025 → 19 Sept 2025Activity: Participating in or organising an event › Participation in conference
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Invited talk "Epigenetic regulation of stress response in the Crenarchaeal model Sulfolobus acidocaldarius"
Rani Baes (Invited speaker), Veerke De Kock (Contributor), Mohea Couturier (Contributor), Marissa De Vos (Contributor), Remus Dame (Contributor) & Eveline Peeters (Contributor)
17 Sept 2025Activity: Talk or presentation › Talk or presentation at a conference
Equipment
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Industrial Biotechnology Innovator and Synthetic Biology Accelerator – Flanders (IBISBA-FL)
Eveline Peeters (Consortium partner)
Department of Bio-engineering SciencesFacility/equipment: Facility › no e-resource/distributed
Datasets
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The Lrs14-like AbfR1 homolog from Metallosphaera sedula is a nucleoid-organizing protein
De Kock, V. (Creator), Willaert, R. (Creator), Gansemans, Y. (Creator), Van Nieuwerburgh, F. (Creator), Baes, R. (Creator) & Peeters, E. (Creator), European Nucleotide Archive, 29 May 2025
https://www.ebi.ac.uk/ena/browser/view/PRJEB83172
Dataset
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YbiB: a Novel Interactor of the GTPase ObgE
Deckers, B. (Creator), Vercauteren, S. (Creator), De Kock, V. (Creator), Martin, C. (Creator), Lazar, T. (Creator), Herpels, P. (Creator), Dewachter, L. (Creator), Verstraeten, N. (Creator), Peeters, E. (Creator), Ballet, S. (Creator), Michiels, J. (Creator), Galicia Diaz Santana, C. (Creator) & Versées, W. (Creator), Zenodo, 8 Nov 2022
Dataset
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Proteome study on S. acidocaldarius heat shock response (Project: PXD038744)
Baes, R. (Creator), Grünberger, F. (Creator), Pyr dit Ruys, S. (Creator), Couturier, M. (Creator), De Keulenaer, S. (Creator), Skevin, S. (Creator), Van Nieuwerburgh, F. (Creator), Vertommen, D. (Creator), Grohmann, D. (Creator), Ferreira-Cerca, S. (Creator) & Peeters, E. (Creator), Proteomics Identifications Database (PRIDE), 7 Aug 2023
DOI: 10.1128/mbio.03593-22, https://www.ebi.ac.uk/pride/archive/projects/PXD038744
Dataset
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Dataset "Effects of genomic location on ectopic integration and gene expression of a reporter gene cassette in Sulfolobus acidocaldarius"
Xu, Y. (Creator), Peeters, A. I. (Creator), Bervoets, I. (Creator), De Mey, M. (Creator), Baes, R. (Creator) & Peeters, E. (Creator), Zenodo, 20 Jul 2025
Dataset
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Transcriptome study on S. acidocaldarius heat shock response (Project: PRJEB57647)
Baes, R. (Creator), Grünberger, F. (Creator), Pyr dit Ruys, S. (Creator), Couturier, M. (Creator), De Keulenaer, S. (Creator), Skevin, S. (Creator), Van Nieuwerburg, F. (Creator), Vertommen, D. (Creator), Grohmann, D. (Creator), Ferreira-Cerca, S. (Creator) & Peeters, E. (Creator), European Nucleotide Archive, 18 Dec 2022
DOI: 10.1128/mbio.03593-22, https://www.ebi.ac.uk/ena/browser/view/PRJEB57647
Dataset