Research output per year
Research output per year
Research output
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2023
Foundation of the Belgian Society for Viruses of Microbes and Meeting Report of Its Inaugural Symposium
Latka, A., Aertsen, A., Boeckaerts, D., Blasdel, B., Ceyssens, P-J., Garcia-Pino, A., Gillis, A., Lavigne, R., Lima-Mendez, G., Matthijnssens, J., Onsea, J., Peeters, E., Pirnay, J-P., Thiry, D., Vandenheuvel, D., Van Mechelen, E., Venneman, J., Verbeken, G., Wagemans, J. & Briers, Y., 22 May 2023, In: Viruses. 15, 5, 13 p., 1213.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Downloads (Pure) -
High affinity iron uptake by pyoverdine in Pseudomonas aeruginosa involves multiple regulators besides Fur, PvdS, and FpvI
Cornelis, P., Tahrioui, A., Lesouhaitier, O., Bouffartigues, E., Feuilloley, M., Baysse, C. & Chevalier, S., Apr 2023, In: Biometals. 36, 2, p. 255-261 7 p.Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
Screening fungal strains isolated from a limestone cave on their ability to grow and precipitate CaCO3 in an environment relevant to concrete
Van Wylick, A., Vandersanden, S., Jonckheere, K., Rahier, H., De Laet, L. & Peeters, E., 3 May 2023, In: microPublication Biology. p. 1-9 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Downloads (Pure) -
Structural basis of DNA binding by YdaT, a functional equivalent of the CII repressor in the cryptic prophage CP-933P from Escherichia coli O157:H7
Prolic Kalinsek, M., Volkov, O., Hadzi, S., Van Dyck, J., Bervoets, I., Charlier, D. & Loris, R., 27 Feb 2023, In: Acta Crystallographica Section D: Structural Biology (2016- ). 79, Pt 3, p. 245-258 14 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile20 Downloads (Pure) -
YbiB: a novel interactor of the GTPase ObgE
Deckers, B., Vercauteren, S., De Kock, V., Martin, C., Lazar, T., Herpels, P., Dewachter, L., Verstraeten, N., Peeters, E., Ballet, S., Michiels, J., Galicia, C. & Versées, W., 24 Apr 2023, In: Nucleic Acids Research. 51, 7, p. 3420-3435 16 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Downloads (Pure) -
2022
Chemical Protection and Premodification-Binding Interference for the Identification of Phosphate and Base-Specific Contacts in Protein-DNA Complexes
Charlier, D., Aug 2022, In: Methods in Molecular Biology: Experimental Cholestasis Research . 2516, p. 201-237 37 p.Research output: Contribution to journal › Article
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Detecting DNA Methylations in the Hyperthermoacidophilic Crenarchaeon Sulfolobus acidocaldarius Using SMRT Sequencing.
Tellgren-Roth, C. & Couturier, M., Jan 2022, In: Methods in molecular biology (Clifton, N.J.). 2516, p. 39-50 12 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Determination of RNA Structure with In Vitro SHAPE Experiments
Baes, R., Charlier, D. & Peeters, E., 4 Aug 2022, In: Methods in Molecular Biology. 2516, p. 259-290 32 p.Research output: Contribution to journal › Article
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DNA-Binding Properties of a Novel Crenarchaeal Chromatin-Organizing Protein in Sulfolobus acidocaldarius
Lemmens, L., Wang, K., Ruykens, E., Nguyen, V. T., Lindås, A. C., Willaert, R., Couturier, M. & Peeters, E., Apr 2022, In: Biomolecules. 12, 4, 524.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Effect of Phthalates and Their Substitutes on the Physiology of Pseudomonas aeruginosa
Louis, M., Tahrioui, A., Verdon, J., David, A., Rodrigues, S., Barreau, M., Manac'h, M., Thiroux, A., Luton, B., Dupont, C., Calvé, M. L., Bazire, A., Crépin, A., Clabaut, M., Portier, E., Taupin, L., Defontaine, F., Clamens, T., Bouffartigues, E., Cornelis, P. & 6 others, , 5 Sep 2022, In: Microorganisms. 10, 9, 19 p., 1788.Research output: Contribution to journal › Article › peer-review
Open AccessFile62 Downloads (Pure) -
Engineering transcriptional regulation in Escherichia coli using an archaeal TetR-family transcription factor
Sybers, D., Bernauw, A., Maklad, H. R. M. A., El Masri, D., Charlier, D., De Mey, M., Bervoets, I. & Peeters, E., 30 Jan 2022, In: Gene. 809, 9 p., 146010.Research output: Contribution to journal › Article › peer-review
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Functional Grading of Mycelium Materials with Inorganic Particles: The Effect of Nanoclay on the Biological, Chemical and Mechanical Properties
Elsacker, E., De Laet, L. & Peeters, E., Jun 2022, In: Biomimetics (Basel, Switzerland). 7, 2, p. 1-23 23 p., 57.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)63 Downloads (Pure) -
In Vitro Transcription Assay for Archaea Belonging to Sulfolobales
Sybers, D., Charlier, D. & Peeters, E., 4 Aug 2022, In: Methods in Molecular Biology. 2516, p. 81-102 22 p.Research output: Contribution to journal › Article
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Large-scale robotic extrusion-based additive manufacturing with living mycelium materials
Vanden Elsacker, E., Peeters, E. & De Laet, L., 1 Jun 2022, In: Sustainable Futures. 4, 2022, p. 1-14 14 p., 100085.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)103 Downloads (Pure) -
Mechanisms of stress tolerance and their effects on the ecology and evolution of mycorrhizal fungi
Branco, S., Schauster, A., Liao, H-L. & Ruytinx, J., Sep 2022, In: New Phytologist. 235, 6, p. 2158-2175 18 p.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
Pf4 Phage Variant Infection Reduces Virulence-Associated Traits in Pseudomonas aeruginosa
Tortuel, D., Tahrioui, A., David, A., Cambronel, M., Nilly, F., Clamens, T., Maillot, O., Barreau, M., Feuilloley, M. G. J., Lesouhaitier, O., Filloux, A., Bouffartigues, E., Cornelis, P. & Chevalier, S., Sep 2022, In: Microbiology spectrum. 10, 5, p. e0154822Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)21 Downloads (Pure) -
Polyhydroxyalkanoate (PHA) Biopolymer Synthesis by Marine Bacteria of the Malaysian Coral Triangle Region and Mining for PHA Synthase Genes
Alsaadi, A., Ganesen, S. S. K., Amelia, T. S. M., Moanis, R., Peeters, E., Vigneswari, S. & Bhubalan, K., 18 Oct 2022, In: Microorganisms. 10, 10, 2057.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Downloads (Pure) -
Pseudomonas aeruginosa Biofilm Dispersion by the Human Atrial Natriuretic Peptide
Louis, M., Clamens, T., Tahrioui, A., Desriac, F., Rodrigues, S., Rosay, T., Harmer, N., Diaz, S., Barreau, M., Racine, P-J., Kipnis, E., Grandjean, T., Vieillard, J., Bouffartigues, E., Cornelis, P., Chevalier, S., Feuilloley, M. G. J. & Lesouhaitier, O., Mar 2022, In: Advanced Science. 9, 7, 13 p., e2103262.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)70 Downloads (Pure) -
Separation and Characterization of Protein-DNA Complexes by EMSA and In-Gel Footprinting
Charlier, D. & Bervoets, I., Aug 2022, In: Methods in Molecular Biology: Experimental Cholestasis Research . 2516, p. 169-199 31 p.Research output: Contribution to journal › Article
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2021
Alternative dimerization is required for activity and inhibition of the HEPN ribonuclease RnlA
Garcia-Rodriguez, G., Charlier, D., Wilmaerts, D., Michiels, J. & Loris, R., 9 Jul 2021, In: Nucleic Acids Research. 49, 12, p. 7164-7178 15 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)94 Downloads (Pure) -
Archaea: A Gold Mine for Topoisomerase Diversity.
Garnier, F., Couturier, M., Débat, H. & Nadal, M., May 2021, In: Frontiers in Microbiology. 12, 661411.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
A Transcriptomic Atlas of the Ectomycorrhizal Fungus Laccaria bicolor
Ruytinx, J., Miyauchi, S., Hartmann-Wittulsky, S., Pereira, M. D. F., Guinet, F., Churin, J-L., Put, C., Tacon, F. L., Veneault-Fourrey, C., Martin, F. M. & Kohler, A., 17 Dec 2021, In: Microorganisms. 9, 12, 23 p., 2612.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Bistable expression of a toxin-antitoxin system located in a cryptic prophage of Escherichia coliO157:H7
Jurenas, D., Fraikin, N., Goormaghtigh, F., De Bruyn, P., Vandervelde, A., Jove, T., Charlier, D., Loris, R. & Van Melderen, L., 21 Dec 2021, In: mBio. 12, 6, 15 p., e0294721.Research output: Contribution to journal › Article › peer-review
Open AccessFile4 Citations (Scopus)45 Downloads (Pure) -
Comparative genomics of DNA-binding transcription factors in archaeal and bacterial organisms
Martinez-Liu, L., Hernandez-Guerrero, R., Rivera-Gomez, N., Martinez-Nuñez, M. A., Escobar-Turriza, P., Peeters, E. & Perez-Rueda, E., 2 Jul 2021, In: PLOS ONE. 16, 7, 13 p., e0254025.Research output: Contribution to journal › Article › peer-review
Open Access -
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi
Lofgren, L. A., Nguyen, N. H., Vilgalys, R., Ruytinx, J., Liao, H-L., Branco, S., Kuo, A., LaButti, K., Lipzen, A., Andreopoulos, W., Pangilinan, J., Riley, R., Hundley, H., Na, H., Barry, K., Grigoriev, I. V., Stajich, J. E. & Kennedy, P. G., Apr 2021, In: New Phytologist. 230, 2, p. 774-792 19 p.Research output: Contribution to journal › Article › peer-review
23 Citations (Scopus) -
Comprehensive genomic analysis reveals virulence factors and antibiotic resistance genes in Pantoea agglomerans KM1, a potential opportunistic pathogen
Guevarra, R. B., Magez, S., Peeters, E., Chung, M. S., Kim, K. H. & Radwanska, M., Jan 2021, In: PLOS ONE. 16, 1, 27 p., e0239792.Research output: Contribution to journal › Article › peer-review
Open Access11 Citations (Scopus) -
Current state and future prospects of pure mycelium materials
Vandelook, S., Elsacker, E., Van Wylick, A., De Laet, L. & Peeters, E., 20 Dec 2021, In: Fungal biology and biotechnology. 8, 1, 10 p., 20.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Citations (Scopus)243 Downloads (Pure) -
Disentangling the role of ectomycorrhizal fungi in plant nutrient acquisition along a Zn gradient using X-ray imaging
Zhang, K., Tappero, R., Ruytinx, J., Branco, S. & Liao, H-L., 20 Dec 2021, In: Science of the Total Environment. 801, 149481.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Entropic pressure controls olgomerization of Vibrio cholerae ParD2 antitoxin
Garcia Rodriguez, G., Girardin, Y., Volkov, O., Singh, R. K., Muruganandam, G., Van Dyck, J., Sobott, F., Versées, W., Charlier, D. & Loris, R., 18 Jun 2021, In: Acta Crystallographica Section D: Structural Biology (2016- ). 77, Pt 7, p. 904-920 17 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile3 Citations (Scopus)101 Downloads (Pure) -
From Macro to Micro: a combined bioluminescence-fluorescence approach to monitor bacterial localization
Soldan, R., Sanguankiattichai, N., Bach-Pages, M., Bervoets, I., Huang, W. E. & Preston, G. M., Apr 2021, In: Environmental Microbiology. 23, 4, p. 2070-2085 16 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Mechanical characteristics of bacterial cellulose-reinforced mycelium composite materials
Elsacker, E., Vandelook, S., Damsin, B., Van Wylick, A., Peeters, E. & De Laet, L., 4 Dec 2021, In: Fungal biology and biotechnology. 8, 1, 14 p., 18.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)153 Downloads (Pure) -
Netwerken: een verhaal over mycelium, moleculen en mensen
Vanden Elsacker, E. & Peeters, E., 2021, Standpunt, p. 48-49.Research output: Contribution to specialist/vulgarizing publication › Article › Vulgarizing
File7 Downloads (Pure) -
The biology of thermoacidophilic archaea from the order Sulfolobales
Lewis, A. M., Recalde, A., Bräsen, C., Counts, J. A., Nussbaum, P., Bost, J., Schocke, L., Shen, L., Willard, D. J., Quax, T. E. F., Peeters, E., Siebers, B., Albers, S-V. & Kelly, R. M., 17 Aug 2021, In: FEMS Microbiology Reviews. 45, 4, fuaa063.Research output: Contribution to journal › Article › peer-review
15 Citations (Scopus) -
2020
A comprehensive framework for the production of mycelium-based lignocellulosic composites
Elsacker, E., Vandelook, S., Van Wylick, A., Ruytinx, J., De Laet, L. & Peeters, E., 10 Jul 2020, In: Science of the Total Environment. 725, 138431.Research output: Contribution to journal › Article › peer-review
70 Citations (Scopus)273 Downloads (Pure) -
Activation of the Cell Wall Stress Response in Pseudomonas aeruginosa Infected by a Pf4 Phage Variant
Tortuel, D., Tahrioui, A., Rodrigues, S., Cambronel, M., Boukerb, A. M., Maillot, O., Verdon, J., Bere, E., Nusser, M., Brenner-Weiss, G., David, A., Azuama, O. C., Feuilloley, M. G. J., Orange, N., Lesouhaitier, O., Cornelis, P., Chevalier, S. & Bouffartigues, E., Nov 2020, In: Microorganisms. 8, 11, p. 1-20 20 p., 1700.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)75 Downloads (Pure) -
Defining heat shock response for the thermoacidophilic model crenarchaeon Sulfolobus acidocaldarius
Baes, R., Lemmens, L., Mignon, K., Carlier, M. & Peeters, E., 19 Jun 2020, In: Extremophiles. 24, p. 681–692 12 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile51 Downloads (Pure) -
DNA-Binding and Transcription Activation by Unphosphorylated Response Regulator AgrR From Cupriavidus metallidurans Involved in Silver Resistance
Ali, M. M., Provoost, A., Mijnendonckx, K., Van Houdt, R. & Charlier, D., 17 Jul 2020, In: Frontiers in Microbiology. 11, 17 p., 1635.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Fungal heavy metal adaptation through single nucleotide polymorphisms and copy-number variation
Bazzicalupo, A. L., Ruytinx, J., Ke, Y-H., Coninx, L., Colpaert, J. V., Nguyen, N. H., Vilgalys, R. & Branco, S., 27 Oct 2020, In: Molecular Ecology. 29, 21, p. 4157-4169 13 p.Research output: Contribution to journal › Article › peer-review
17 Citations (Scopus) -
Membrane-Interactive Compounds From Pistacia lentiscus L. Thwart Pseudomonas aeruginosa Virulence
Tahrioui, A., Ortiz, S., Azuama, O. C., Bouffartigues, E., Benalia, N., Tortuel, D., Maillot, O., Chemat, S., Kritsanida, M., Feuilloley, M., Orange, N., Michel, S., Lesouhaitier, O., Cornelis, P., Grougnet, R., Boutefnouchet, S. & Chevalier, S., 26 May 2020, In: Frontiers in Microbiology. 11, 1068.Research output: Contribution to journal › Article › peer-review
Open AccessFile21 Citations (Scopus)76 Downloads (Pure) -
Phosphorylation of the acyl-CoA binding pocket of the FadR transcription regulator in Sulfolobus acidocaldarius
Maklad, H. R., Gutierrez, G. J., Esser, D., Siebers, B. & Peeters, E., Aug 2020, In: Biochimie. 175, p. 120-124 5 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile5 Citations (Scopus)74 Downloads (Pure) -
Putting an end to the Pseudomonas aeruginosa IQS controversy
Cornelis, P., Feb 2020, In: MicrobiologyOpen. 9, 2, e962.Research output: Contribution to journal › Article › peer-review
Open AccessFile28 Citations (Scopus)138 Downloads (Pure) -
Tackling Pseudomonas aeruginosa Virulence by Mulinane-Like Diterpenoids from Azorella atacamensis
Azuama, O. C., Ortiz, S., Quirós-Guerrero, L., Bouffartigues, E., Tortuel, D., Maillot, O., Feuilloley, M., Cornelis, P., Lesouhaitier, O., Grougnet, R., Boutefnouchet, S., Wolfender, J-L., Chevalier, S. & Tahrioui, A., 2 Dec 2020, In: Biomolecules. 10, 12, p. 1-25 25 p., 1626.Research output: Contribution to journal › Article › peer-review
Open AccessFile7 Citations (Scopus)62 Downloads (Pure) -
The events that may contribute to subgingival dysbiosis: a focus on the interplay between iron, sulfide and oxygen
Chathoth, K., Martin, B., Cornelis, P., Yvenou, S., Bonnaure-Mallet, M. & Baysse, C., 1 Jul 2020, In: FEMS Microbiology Letters. 367, 14Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
The Temperature-Regulation of Pseudomonas aeruginosa cmaX-cfrX-cmpX Operon Reveals an Intriguing Molecular Network Involving the Sigma Factors AlgU and SigX
Bouffartigues, E., Si Hadj Mohand, I., Maillot, O., Tortuel, D., Omnes, J., David, A., Tahrioui, A., Duchesne, R., Azuama, C. O., Nusser, M., Brenner-Weiss, G., Bazire, A., Connil, N., Orange, N., Feuilloley, M. G. J., Lesouhaitier, O., Dufour, A., Cornelis, P. & Chevalier, S., 21 Oct 2020, In: Frontiers in Microbiology. 11, 14 p., 579495.Research output: Contribution to journal › Article › peer-review
Open AccessFile12 Citations (Scopus)68 Downloads (Pure) -
Traditional Chinese Medicine Tanreqing Inhibits Quorum Sensing Systems in Pseudomonas aeruginosa
Yang, W., Wei, Q., Tong, Q., Cui, K., He, G., Lin, L., Ma, L. Z., Cornelis, P. & Wang, Y., 17 Dec 2020, In: Frontiers in Microbiology. 11, 18 p., 517462.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)77 Downloads (Pure) -
2019
A script for initiating molecular biology studies with non-conventional yeasts based on Saccharomycopsis schoenii
Kayacan, Y., Griffiths, A. M. & Wendland, J., Dec 2019, In: Microbiological Research. 229, 126342.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
A TetR-family transcription factor regulates fatty acid metabolism in the archaeal model organism Sulfolobus acidocaldarius
Wang, K., Sybers, D., Maklad, H. R., Lemmens, L., Lewyllie, C., Zhou, X., Schult, F., Bräsen, C., Siebers, B., Valegård, K., Lindås, A-C. & Peeters, E., 4 Apr 2019, In: Nature Communications. 10, 1, 16 p., 1542.Research output: Contribution to journal › Article › peer-review
Open AccessFile35 Citations (Scopus)73 Downloads (Pure) -
Competitive Repression of the artPIQM Operon for Arginine and Ornithine Transport by Arginine Repressor and Leucine-Responsive Regulatory Protein in Escherichia coli
Torres Montaguth, O. E., Bervoets, I., Peeters, E. & Charlier, D., Jul 2019, In: Frontiers in Microbiology. 10, JULY, 14 p., 1563.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)37 Downloads (Pure) -
Extracellular DNA release, quorum sensing, and PrrF1/F2 small RNAs are key players in Pseudomonas aeruginosa tobramycin-enhanced biofilm formation
Tahrioui, A., Duchesne, R., Bouffartigues, E., Rodrigues, S., Maillot, O., Tortuel, D., Hardouin, J., Taupin, L., Groleau, M-C., Dufour, A., Déziel, E., Brenner-Weiss, G., Feuilloley, M., Orange, N., Lesouhaitier, O., Cornelis, P. & Chevalier, S., 1 Dec 2019, In: npj biofilms and microbiomes. 5, 1, 15.Research output: Contribution to journal › Article › peer-review
Open Access39 Citations (Scopus) -
Genomic and Transcriptomic Changes that Mediate Increased Platinum Resistance in Cupriavidus metallidurans
Ali, M. M., Provoost, A., Maertens, L., Leys, N., Monsieurs, P., Charlier, D. & Houdt, R. V., 18 Jan 2019, In: Genes. 10, 1, 21 p., 63.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus)