Projects per year
Personal profile
Expertise
My research is centered around the development and implementation of machine learning algorithms for biomedical applications.
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Collaborations and top research areas from the last five years
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IRP27: TumorScope: Digital health research on data, AI and legal challenges at the VUB and UZB
Vranken, W., Vandemeulebroucke, J., Cornu, P., Quinn, P., Van Dooren, S., Duerinck, J., Olsen, C. & Forsyth, R.
1/11/24 → 30/04/27
Project: Fundamental
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OZR4282: Bilateral cooperation within the framework of a joint doctoral project: benchfee for joint PhD VUB - ULB, BEAHAN Brendan
1/10/23 → 30/09/27
Project: Fundamental
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ANI299: Combining exome and transcriptome data to unravel the genetic basis of the lissencephalies
Jansen, A., Stouffs, K., Olsen, C. & Rijckmans, E.
1/10/21 → 1/10/25
Project: Fundamental
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EUAR56: Horizon 2020: HosmartAI: Hospital Smart development based on AI.
Vranken, W., Schoors, D., De Canck, H., Vandemeulebroucke, J., Duerinck, J., Olsen, C., Van Dooren, S. & Quinn, P.
1/01/21 → 31/05/24
Project: Fundamental
Research output
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APCAD Part 2: A Novel Method for Detection of Meiotic Aneuploidy in Preimplantation Embryos
Verdyck, P., Berckmoes, V., Fernandez Gallardo, E., Keymolen, K., Olsen, C. & De Rycke, M., Feb 2025, In: Genes. 16, 2, 12 p., 115.Research output: Contribution to journal › Article › peer-review
Open Access -
Beyond Known Driver Variants - Unraveling variants of unknown significance in BRAF: A path to improve diagnosis, prognosis, and therapy in cancer patients
Vanisterbecq, D., Vandenplas, H., Olsen, C., Vlaeminck, J., Vaeyens, F., Helsen, C., Hes, F. J., Giron, P. & Maes, K., 14 Mar 2025, (Unpublished). 1 p.Research output: Unpublished contribution to conference › Poster
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Combining evolution and protein language models for an interpretable cancer driver mutation prediction with D2Deep
Tzavella, K., Diaz, A., Olsen, C. & Vranken, W., 1 Jan 2025, In: Briefings in Bioinformatics. 26, 1, 13 p., bbae664.Research output: Contribution to journal › Article › peer-review
Open Access -
Targeting MAT2A alters the methylation landscape and DNA damage response in Multiple Myeloma, revealing novel combination strategies.
Van Hemelrijck, L. A., Wang, Y., Muylaert, C., Olsen, C., De Veirman, K., Vanderkerken, K., Menu, E. & De Bruyne, E., 7 Feb 2025. 1 p.Research output: Unpublished contribution to conference › Poster
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Unraveling variants of unknown significance in BRAF: A path to improve diagnosis, prognosis, and therapy in cancer patients
Vanisterbecq, D., Vandenplas, H., Olsen, C., Vlaeminck, J., Vaeyens, F., Helsen, C., Hes, F. J., Giron, P. & Maes, K., 2025, (Unpublished).Research output: Unpublished contribution to conference › Poster
Datasets
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D2Deep: Combining evolution and protein language models for cancer driver mutation prediction
Tzavella, K. (Creator), Vranken, W. (Supervisor) & Olsen, C. (Supervisor), Zenodo, 4 Aug 2023
DOI: 10.5281/zenodo.8200795, https://www.biorxiv.org/content/10.1101/2023.11.17.567550v1.full.pdf and one more link, https://tumorscope.be/d2deep/ (show fewer)
Dataset
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De Novo Cancer Mutations Frequently Associate with Recurrent Chromosomal Abnormalities during Long-Term Human Pluripotent Stem Cell Culture
Al Delbany, D. (Creator), Ghosh, M. (Creator), Krivec, N. (Creator), Huyghebaert, A. (Creator), Regin, M. (Creator), Duong, C. M. (Creator), Lei, Y. (Creator), Sermon, K. (Creator), Olsen, C. (Creator) & Spits, C. (Creator), OSF, 2024
Dataset
Prizes
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Best Poster Presentation BHS 2025
Van Hemelrijck, Lien Ann (Recipient), Wang, Yanmeng (Recipient), Muylaert, Catharina (Recipient), Olsen, Catharina (Recipient), De Veirman, Kim (Recipient), Vanderkerken, Karin (Recipient), Menu, Eline (Recipient) & De Bruyne, Elke (Recipient), 7 Feb 2025
Prize: Prize (including medals and awards)
Activities
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24th Annual Symposium BeSHG
Kathelijn Keymolen (Chair), Alexander Gheldof (Participant), Jacques De Grève (Participant), Helena Deryckere (Participant), Boyan Dimitrov (Participant), Ingeborg Liebaers (Participant), Pascale De Becker (Participant), Christiane Winter (Participant), Rani Cooreman (Participant), Nymfa Vandermaelen (Participant), Ann Van Den Bogaert (Participant), Yanissa Van Buggenhout (Participant), Kelly De Rooms (Participant), Chloë Tina M Vonckx (Participant), Inez Bogaerts (Participant), Kim De Hauwere (Participant), Martine De Rycke (Participant), Elke De Ridder (Participant), Julie Nekkebroeck (Participant), Lauren Van Droogenbroeck (Participant), Sara Seneca (Participant), Bart Dequeker (Participant), Kim Van Berkel (Participant), Callaerts Annick (Participant), Sarah Peeters (Participant), Elia Fernandez Gallardo (Participant), Elke De Schutter (Participant), Toon Janssen (Participant), Catharina Olsen (Participant), Frederik Jan Hes (Participant), Sophie Bessems (Participant), Dirk De Smedt (Participant), Sofia Papadimitriou (Participant), Frone Anoek Meersschaert (Participant), Pieter Verdyck (Participant), Philippe Giron (Participant), Nathalie Eduarda M Vanden Eynde (Participant), Annelore Van Der Kelen (Participant), Laura Polsler (Participant), Esther Scheirlynck (Participant), Stefanie Rosa Van de Voorde (Participant), Thomy de Ravel (Participant) & Sophie Uyttebroeck (Participant)
12 Apr 2024Activity: Participating in or organising an event › Participation in conference
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High resolution and quantitative intra-ductal spatial analysis reveals phenotypic and functional diversification in pancreatic cancer
Ellis Michiels (Speaker), Ilse Rooman (Contributor), Nouredin Messaoudi (Contributor), Hediel Madhloum (Contributor), Silke Christophe Van Lint (Contributor), Philippe Giron (Contributor), Catharina Olsen (Contributor), Nelson Dusetti (Contributor) & Jean-Luc Van Laethem (Contributor)
30 Apr 2023Activity: Talk or presentation › Talk or presentation at a conference
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Characterization of the evolving mutational landscape in multiple myeloma during disease progression using blood-derived cell free DNA: an explorative study
Robbe Heestermans (Speaker), Wouter De Brouwer (Contributor), Ken Maes (Contributor), Isabelle Vande Broek (Contributor), Freya Vaeyens (Contributor), Catharina Olsen (Contributor), Toon Janssen (Contributor), Ann De Becker (Contributor), Marleen Bakkus (Contributor), Henri Schots (Contributor) & Ivan Van Riet (Contributor)
3 Feb 2023Activity: Talk or presentation › Talk or presentation at a conference
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22nd annual joint meeting BeSHG & NVHG
Frederik Jan Hes (Participant), Ingeborg Liebaers (Participant), Mary-Louise Bonduelle (Participant), Dirk De Smedt (Participant), Sophie Uyttebroeck (Participant), Stefanie Rosa Van de Voorde (Participant), Ileen Slegers (Participant), Annelore Van Der Kelen (Participant), Thomy de Ravel (Participant), Veronik Hutse (Participant), Julie Nekkebroeck (Participant), Aranza Cortés Jáuregui (Participant), Pascale De Becker (Participant), Freya Vaeyens (Participant), Bart Dequeker (Participant), Sara Seneca (Participant), Ann Van Den Bogaert (Participant), Eva Sammels (Participant), Annelies Fieuw (Participant), Alexander Gheldof (Participant), Catharina Olsen (Participant), Sonia Van Dooren (Participant), Kim Van Berkel (Participant), Boyan Dimitrov (Participant), Rani Cooreman (Participant), Saar Van Pottelberghe (Participant), Jelle Vlaeminck (Participant), Randy Osei (Participant) & Christiane Winter (Participant)
21 Apr 2022 → 22 Apr 2022Activity: Participating in or organising an event › Participation in conference
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In situ detection of KRAS(G12D) mutations in the spatial context of pancreatic cancer subtypes
Ellis Michiels (Speaker), Ilse Rooman (Contributor), Nouredin Messaoudi (Contributor), Catharina Olsen (Contributor), Philippe Giron (Contributor), Pierre Lefesvre (Contributor) & Kim Frederix (Contributor)
8 Oct 2022 → 11 Oct 2022Activity: Talk or presentation › Talk or presentation at a conference