Research output per year
Research output per year
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Dive into the research topics where Jose Gavalda Garcia is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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bio2Byte Tools deployment as a Python package and Galaxy tool to predict protein biophysical properties
Gavalda-Garcia, J., Díaz, A. & Vranken, W., 2 Sep 2024, In: Bioinformatics. 40, 9Research output: Contribution to journal › Article › peer-review
Open Access -
Data-driven probabilistic definition of the low energy conformational states of protein residues
Gavalda-Garcia, J., Bickel, D., Roca-Martinez, J., Raimondi, D., Orlando, G. & Vranken, W., Sep 2024, In: NAR genomics and bioinformatics. 6, 3, 13 p., lqae082.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)1 Downloads (Pure) -
Gradations in protein dynamics captured by experimental NMR are not well represented by AlphaFold2 models and other computational metrics
Gavalda-Garcia, J., Dixit, B., Díaz, A., Ghysels, A. & Vranken, W., 6 Dec 2024, (E-pub ahead of print) In: Journal of Molecular Biology. 437, 2, p. 168900Research output: Contribution to journal › Article › peer-review
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Experiences with a training DSW knowledge model for early-stage researchers
Devignes, M-D., Smaïl-Tabbone, M., Dhondge, H., Dolcemascolo, R., Gavaldá-García, J., Higuera-Rodriguez, R. A., Kravchenko, A., Roca Martínez, J., Messini, N., Pérez-Ràfols, A., Pérez Ropero, G., Sperotto, L., Chauvot de Beauchêne, I. & Vranken, W., 2023, In: Open Research Europe. 3, 20 p., 97.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
A roadmap to scientific software deployment: bio2Byte Tools as a use case
Gavalda Garcia, J., Díaz, A. & Vranken, W., 11 Mar 2022.Research output: Unpublished contribution to conference › Poster
Open Access
Datasets
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Prediction of Conformational Variability for RRM proteins in inter3m data base
Gavalda Garcia, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 14 Feb 2023
DOI: 10.5281/zenodo.7640833, https://doi.org/10.5281/zenodo.7640833
Dataset
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Bio2Byte SARS-CoV-2
Kagami, L. P. (Creator), Roca Martinez, J. (Creator), Gavalda Garcia, J. (Creator), Ramasamy, P. (Creator), Feenstra, K. A. (Creator) & Vranken, W. (Supervisor), BMC Molecular and Cell Biology, 7 Dec 2020
DOI: 10.1186/s12860-021-00362-w, https://bio2byte.be/sars2/
Dataset
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ConforMine Molecular Dynamics Data: Conformational Variability, Secondary Structure Propensities and Molecular Dynamics Simulations
Gavalda Garcia, J. (Creator), Roca Martinez, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 2023
DOI: 10.5281/zenodo.7575777, https://doi.org/10.5281/zenodo.7575777
Dataset
Activities
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21st European Conference on Computational Biology
Jose Gavalda Garcia (Participant)
18 Sep 2022 → 21 Sep 2022Activity: Participating in or organising an event › Participation in conference
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Progress presentation RNAct workshop 5
Jose Gavalda Garcia (Speaker)
21 Nov 2022Activity: Talk or presentation › Talk or presentation at a workshop/seminar
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Netherlands Society on Biomolecular Modelling Fall Meeting
Jose Gavalda Garcia (Organiser), Joel Roca Martinez (Organiser), Charlotte Crauwels (Organiser), Konstantina Tzavella (Organiser) & Wim Vranken (Organiser)
27 Oct 2022Activity: Participating in or organising an event › Participation in conference
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Applied Bioinformatics in Life Sciences: 4th edition (2022)
Jose Gavalda Garcia (Participant)
10 Mar 2022 → 11 Mar 2022Activity: Participating in or organising an event › Participation in conference
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RNAct workshop 5
Jose Gavalda Garcia (Participant) & Joel Roca Martinez (Participant)
29 Nov 2022 → 3 Dec 2022Activity: Participating in or organising an event › Participation in workshop, seminar
Press/Media
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Las voces del año de estado de alarma en Castellón
14/03/21
1 item of Media coverage
Press/Media: Research