Projects per year
Personal profile
Expertise
Structural Bioinformatics and computational biology
- Prediction of biophysical characteristics of proteins from their sequence
- Effect of amino acid variants on proteins and organisms
Computational aspects of Nuclear Magnetic Resonance (NMR)
- Statistical analysis of NMR data in relation to protein structure
- Structure determination of proteins from experimental NMR data
Education/Academic qualification
Chemistry, Ph.D., Ghent University
1 Dec 1992 → 19 Dec 1996
External positions
VUB director, Interuniversity Institute of Bioinformatics in Brussels
Apr 2014 → …Maitre d'enseignement, Université libre de Bruxelles
2011 → …Scientific officer (NMR), European Bioinformatics Institute
1 Oct 2001 → 30 Sep 2010Research Fellow, Biotechnology Research Institute, National Research Council, Montreal
1 Jan 2000 → 31 Aug 2001Postdoctoral researcher, Université libre de Bruxelles
1 Jan 1999 → 31 Dec 1999Postdoctoral researcher, Biotechnology Research Institute, National Research Council, Montreal
1 Jan 1997 → 31 Dec 1998Fingerprint
Dive into the research topics where Wim Vranken is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Network
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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IOF3022: IOF GEAR: Artificial Intelligence Lab
Nowe, A., De Boer, B., Bogaerts, B., Beuls, K., Loeckx, J., Wiggins, G., Lenaerts, T., Vranken, W., Libin, P., Dooms, A., Barbé, K., Ginis, V., Verboven, S. & Van Droogenbroeck, F.
1/01/22 → 31/12/26
Project: Applied
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OZR3956: Bilateral cooperation within the framework of a joint doctoral project: benchfee for joint PhD VUB - ULB, HEIDIG Sophie-Luise
26/11/21 → 25/11/25
Project: Fundamental
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AIIFUND91: Improving IDP tools interoperability and integration into ELIXIR
1/06/21 → 31/05/23
Project: Fundamental
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AIIFUND92: Building on PDBe-KB to chart and characterize the conformational landscape of native proteins
1/06/21 → 31/05/23
Project: Fundamental
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AIIFUND93: Standardizing Intrinsically Disordered Proteins (IDPs) data
1/01/21 → 31/12/23
Project: Fundamental
Research output
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A roadmap to scientific software deployment: bio2Byte Tools as a use case
Gavalda Garcia, J., Díaz, A. & Vranken, W., 11 Mar 2022.Research output: Unpublished contribution to conference › Poster
Open Access -
Evolutionary adaptation of the folding pathway for secretability
Smets, D., Tsirigotaki, A., Smit, J. H., Krishnamurthy, S., Portaliou, A. G., Vorobieva, A., Vranken, W., Karamanou, S. & Economou, A., 3 Apr 2022, In : BIORXIV. 2022, 51 p.Research output: Contribution to journal › Article
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MutaFrame - an interpretative visualization framework for deleteriousness prediction of missense variants in the human exome
Ancien, F., Pucci, F., Vranken, W. & Rooman, M., 1 Jan 2022, In : Bioinformatics. 38, 1, p. 265-266 2 p.Research output: Contribution to journal › Article
Open Access -
PDBe-KB: collaboratively defining the biological context of structural data
PDBe-KB consortium, 7 Jan 2022, In : Nucleic Acids Research. 50, D1, p. D534-D542 9 p.Research output: Contribution to journal › Article
Open Access4 Citations (Scopus) -
Prediction of Disordered Regions in Proteins with Recurrent Neural Networks and Protein Dynamics
Orlando, G., Raimondi, D., Codicè, F., Tabaro, F. & Vranken, W., 30 Jun 2022, In : Journal of Molecular Biology. 434, 12, p. 167579 167579.Research output: Contribution to journal › Article
Open Access
Activities
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Université libre de Bruxelles (External organisation)
Wim Versées (Jury), François Ancien (Presenter), Wim Vranken (Supervisor), Marianne Rooman (Supervisor), Ann Nowe (Chair)14 Jan 2022Activity: Membership › Member of PhD committee
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Vrije Universiteit Amsterdam (External organisation)
Wim Vranken (Examiner)7 Jan 2021Activity: Membership › Membership of peer-review panel or committee
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ELIXIR IDP community (External organisation)
Wim Vranken (Chair)12 Aug 2020Activity: Membership › Membership of public/government advisory/policy group or panel
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MSCA-IDPfun & ELIXIR All Hands Meeting
Tamas Lazar (Organiser), Peter Tompa (Organiser), Wim Vranken (Organiser), Silvio C E Tosatto (Organiser), Damiano Piovesan (Organiser), Marco Necci (Organiser), Marco Carraro (Organiser)8 Apr 2020Activity: Participating in or organising an event › Participating in or organizing an event at an external academic organisation
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Intrinsically disordered proteins and phase separation, lecture and practical
Wim Vranken (Speaker)30 Jan 2020Activity: Talk or presentation › Talk or presentation at a workshop/seminar
Thesis
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DNA-binding characteristics and phylogenomic occurence of putative transcription regulators encoded by Sulfolobus spindle-shaped virus 1
Author: Neckebroeck, N., Magnus, W., Peeters, E. & Vranken, W., 4 Jul 2022Supervisor: Magnus, W. (Advisor), Peeters, E. (Promotor), Vranken, W. (Co-promotor), Versées, W. (Jury) & Vorobieva, A. A. (Jury)
Student thesis: Master's Thesis
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Exploring the conformations and interactions in peptides with quantum mechanical methodology
Author: Alonso Giner, M., De Proft, F., Vranken, W., Oomen, J. & Ballet, S., Feb 2017Supervisor: Alonso Giner, M. (Promotor), De Proft, F. (Promotor), Vranken, W. (Promotor) & Ballet, S. (Jury)
Student thesis: Master's Thesis
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Identification and characterization of putative transcriptional regulators in archaea
Author: Donvil, L., Peeters, E. & Vranken, W., 10 Sep 2018Supervisor: Orlando, G. (Advisor), de Buyl, S. (Jury) & De Greve, H. (Jury)
Student thesis: Master's Thesis
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Self-labeling Grey-Box Model: An Interpretable Semi-Supervised Classifier
Author: Grau, I., 9 Oct 2020Supervisor: Nowe, A. (Promotor), García Lorenzo, M. M. (External person) (Co-promotor), Signer, B. (Jury), Vranken, W. (Jury), Lenaerts, T. (Jury), Van Dooren, S. (Jury), Vanhoof, K. (External person) (Jury) & Cornelis, C. (External person) (Jury)
Student thesis: Doctoral Thesis
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The effect of genome variation on human proteins: understanding variants and improving their deleteriousness prediction through extensive contextualisation
Author: Raimondi, D. & Vranken, W., 5 May 2017Supervisor: Lenaerts, T. (External person) (Promotor), Vranken, W. (Promotor) & Lenaerts, T. (Promotor)
Student thesis: Doctoral Thesis