Wim Vranken public CV

Wim Vranken

Ph.D.

Academic, Basic (bio-) Medical Sciences
Academic, Chemistry
Academic, Informatics and Applied Informatics
Academic, Department of Bio-engineering Sciences

https://orcid.org/0000-0001-7470-4324

Laarbeeklaan 103
1090 Brussels
Belgium
Pleinlaan 2
1050 Brussels
Belgium

Source: Scopus
Calculated based on no. of publications stored in Pure and citations from Scopus

Research activity per year

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Personal profile

Expertise

Structural Bioinformatics and computational biology

Prediction of biophysical characteristics of proteins from their sequence
Effect of amino acid variants on proteins and organisms

Computational aspects of Nuclear Magnetic Resonance (NMR)

Statistical analysis of NMR data in relation to protein structure
Structure determination of proteins from experimental NMR data

Education/Academic qualification

Chemistry, Ph.D., Ghent University

1 Dec 1992 → 19 Dec 1996

External positions

VUB director, Interuniversity Institute of Bioinformatics in Brussels

Apr 2014 → …

Maitre d'enseignement, Université libre de Bruxelles

2011 → …

Scientific officer (NMR), European Bioinformatics Institute, Hinxton

1 Oct 2001 → 30 Sep 2010

Research Fellow, Biotechnology Research Institute, National Research Council, Montreal

1 Jan 2000 → 31 Aug 2001

Postdoctoral researcher, Université libre de Bruxelles

1 Jan 1999 → 31 Dec 1999

Postdoctoral researcher, Biotechnology Research Institute, National Research Council, Montreal

1 Jan 1997 → 31 Dec 1998

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Recent external collaboration on country level. Dive into details by clicking on the dots or

6 Finished
12 Active

FWOAL1001: ProteinContour: proteome-scale unraveling of the relation between post-translational modifications, biophysical properties, interactions and sub-cellular location of proteins.
Vranken, W.
1/01/21 → 31/12/24
Project: Fundamental
EUAR56: Horizon 2020: HosmartAI: Hospital Smart development based on AI
Vranken, W., Schoors, D. & De Canck, H.
1/01/21 → 31/05/24
Project: Fundamental
OZR3719: Bilateral cooperation within the framework of a joint doctoral project: benchfee for joint PhD VUB - UGent, DIXIT Bhawna
Vranken, W.
27/10/20 → 26/10/24
Project: Fundamental
OZR3588: Financiering FWO hercules: ERA platform: Extended RNA Analysis platform - version 2.0
Rooman, I., Bouwens, L., Heimberg, H., Neyns, B., Vranken, W., Vanhaecke, T., Massie, A., van Grunsven, L., De Bruyne, E., De Bundel, D., Forsyth, R., Breckpot, K., Van Dooren, S., De Kock, J., Njemini, R. & Laoui, D.
1/05/20 → 30/04/24
Project: Fundamental
IRP20: TumorScope: Leveraging VUB and UZ Brussels expertise towards a digital health research platform.
Vranken, W., Vandemeulebroucke, J., Cornu, P., Forsyth, R., Quinn, P. & Van Dooren, S.
1/11/19 → 31/10/24
Project: Fundamental

6153 Citations
33 h-Index
91 Article
5 Poster
2 Meeting abstract (Book)
2 Scientific review
More

Computational resources for identifying and describing proteins driving liquid-liquid phase separation
Pancsa, R., Vranken, W. & Mészáros, B., 1 Feb 2021, In : Briefings in Bioinformatics.
Research output: Contribution to journal › Article
Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM
Uchański, T., Masiulis, S., Fischer, B., Kalichuk, V., López-Sánchez, U., Zarkadas, E., Weckener, M., Sente, A., Ward, P., Wohlkönig, A., Zögg, T., Remaut, H., Naismith, J. H., Nury, H., Vranken, W., Aricescu, A. R., Pardon, E. & Steyaert, J., Jan 2021, In : Nature Methods. 18, 1, p. 60-68 9 p.
Research output: Contribution to journal › Article
6 Citations (Scopus)
MobiDB: intrinsically disordered proteins in 2021
Piovesan, D., Necci, M., Escobedo, N., Monzon, A. M., Hatos, A., Micetic, I., Quaglia, F., Paladin, L., Ramasamy, P., Dosztanyi, Z., Vranken, W. F., Davey, N. E., Parisi, G., Fuxreiter, M. & Tosatto, S. C. E., 8 Jan 2021, In : Nucleic Acids Research. 49, D1, p. D361-D367 7 p.
Research output: Contribution to journal › Article

2 Citations (Scopus)
Accurate prediction of protein beta-aggregation with generalized statistical potentials
Orlando, G., Silva, A., Macedo-Ribeiro, S., Raimondi, D. & Vranken, W., 1 Apr 2020, In : Bioinformatics. 36, 7, p. 2076-2081 6 p.
Research output: Contribution to journal › Article
2 Citations (Scopus)
DisProt: intrinsic protein disorder annotation in 2020
Hatos, A., Hajdu-Soltesz, B., Monzon, A. M., Palopoli, N., Alvarez, L., Aykac-Fas, B., Bassot, C., Benitez, G. I., Bevilacqua, M., Chasapi, A., Chemes, L., Davey, N., Davidovic, R., Dunker, A. K., Elofsson, A., Gobeill, J., Sudha, G., Guharoy, M., Horvath, T., Iglesias, V. & 43 others, Kajava, A. V., Kovacs, O. P., Lamb, J., Lambrughi, M., Lazar, T., Leclercq, J., Leonardi, E., Macedo-Ribeiro, S., Macossay Castillo, M., Maiani, E., Manso, J. A., Marino-Buslje, C., Martinez-Perez, E., Mészáros, B., Micetic, I., Minervini, G., Murvai, N., Necci, M., Ouzounis, C., Pajkos, M., Paladin, L., Pancsa, R. A., Papaleo, E., Parisi, G. D., Pasche, E., Pereira, P. J. B., Promponas, V. J., Pujols, J., Quaglia, F., Ruch, P., Salvatore, M., Schad, E., Szabo, B., Szaniszlo, T., Tamana, S., Tantos, A., Veljković, N., Ventura, S., Vranken, W., Dosztányi, Z., Tompa, P., Tosatto, S. C. E. & Piovesan, D., 8 Jan 2020, In : Nucleic Acids Research. 48, D1, p. D269-D276 gkz975.
Research output: Contribution to journal › Article

Open Access
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36 Citations (Scopus)

4 Downloads (Pure)

12 Talk or presentation at a conference
9 Membership of peer-review panel or committee
3 Talk at an external academic organisation
2 Membership of external research organisation
More

Vrije Universiteit Amsterdam (External organisation)
Wim Vranken (Examiner)
7 Jan 2021
Activity: Membership › Membership of peer-review panel or committee
Intrinsically disordered proteins and phase separation, lecture and practical
Wim Vranken (Speaker)
30 Jan 2020
Activity: Talk or presentation › Talk or presentation at a workshop/seminar
Leveraging the biophysical context of amino acid residues to understand protein behaviour
Wim Vranken (Speaker)
13 Feb 2020
Activity: Talk or presentation › Talk or presentation at a conference
ELIXIR IDP community (External organisation)
Wim Vranken (Chair)
12 Aug 2020
Activity: Membership › Membership of public/government advisory/policy group or panel
KU Leuven (External organisation)
Wim Vranken (Examiner)
15 Jan 2020
Activity: Membership › Membership of peer-review panel or committee

Exploring the conformations and interactions in peptides with quantum mechanical methodology
Author: Alonso Giner, M., De Proft, F., Vranken, W., Oomen, J. & Ballet, S., Feb 2017
Supervisor: Alonso Giner, M. (Promotor), De Proft, F. (Promotor), Vranken, W. (Promotor) & Ballet, S. (Jury)
Student thesis: Master's Thesis
Identification and characterization of putative transcriptional regulators in archaea
Author: Donvil, L., Peeters, E. & Vranken, W., 10 Sep 2018
Supervisor: Orlando, G. (Advisor), de Buyl, S. (Jury) & De Greve, H. (Jury)
Student thesis: Master's Thesis
Self-labeling Grey-Box Model: An Interpretable Semi-Supervised Classifier
Author: Grau, I., 9 Oct 2020
Supervisor: Nowe, A. (Promotor), García Lorenzo, M. M. (External person) (Co-promotor), Signer, B. (Jury), Vranken, W. (Jury), Lenaerts, T. (Jury), Van Dooren, S. (Jury), Vanhoof, K. (External person) (Jury) & Cornelis, C. (External person) (Jury)
Student thesis: Doctoral Thesis
The effect of genome variation on human proteins: understanding variants and improving their deleteriousness prediction through extensive contextualisation
Author: Raimondi, D. & Vranken, W., 5 May 2017
Supervisor: Lenaerts, T. (External person) (Promotor)
Student thesis: Doctoral Thesis
The role of dynamics in emergent protein properties
Author: Vranken, W., Orlando, G. & Lenaerts, T., 23 May 2019
Student thesis: Doctoral Thesis