Infection history imprints prolonged changes to the epigenome, transcriptome and function of Kupffer cells

Mohamed Amer Musrati, Benoit Stijlemans, Abdulkader Azouz, Daliya Kancheva, Sarah Mesbahi, Eva Hadadi, Els Lebegge, Leen Ali, Karen De Vlaminck, Isabelle Scheyltjens, Niels Vandamme, Maida Zivalj, Naela Assaf, Yvon Elkrim, Ilham Ahmidi, Camille Huart, Mohamed Lamkanfi, Martin Guilliams, Patrick De Baetselier, Stanislas GorielyKiavash Movahedi, Jo A. Van Ginderachter

Research output: Contribution to journalArticlepeer-review

Abstract

Background and aims:
Liver macrophages fulfill various homeostatic functions and represent
an essential line of defense against pathogenic insults. However, it remains unclear whether a history of infectious disease in the liver instructs long-term alterations to the liver macrophage compartment.
Methods: We utilized a curable model of parasitic infection invoked by the
protozoan parasite Trypanosoma brucei brucei to investigate whether infection history can durably reshape hepatic macrophage identity and function. Employing a combination of fate mapping, single cell CITE-sequencing, single nuclei multiome analysis, epigenomic analysis, and functional assays, we studied the alterations to the liver macrophage compartment during and after the resolution of infection. Results: We show that T. b. brucei infection alters the
composition of liver-resident macrophages, leading to the infiltration of monocytes that differentiate into various infection-associated macrophage populations with divergent transcriptomic profiles. Whereas infection-associated macrophages disappear post-resolution of infection, monocyte-derived macrophages engraft in the liver, assume a Kupffer cell (KC)-like profile and co-exist with embryonic KCs in the long-term. Remarkably, the prior exposure
to infection imprinted an altered transcriptional program on post-resolution KCs that was underpinned by an epigenetic remodeling of KC chromatin landscapes and a shift in KC ontogeny, along with transcriptional and epigenetic alterations in their niche cells. This reprogramming altered KC functions and was associated with increased resilience to a subsequent bacterial infection.
Conclusion: Our study demonstrates that a prior exposure to a parasitic infection induces trained immunity in KCs, reshaping their identity and function in the long-term.
Original languageEnglish
Number of pages43
JournalJournal of Hepatology
DOIs
Publication statusPublished - 11 Jul 2024

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