Ocean plankton. Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez; Karoline Faust; Nicolas Henry; Johan Decelle; Sébastien Colin; Fabrizio Carcillo; Samuel Chaffron; J Cesar Ignacio-Espinosa; Simon Roux; Flora Vincent; Lucie Bittner; Youssef Darzi; Jun Wang; Stéphane Audic; Léo Berline; Gianluca Bontempi; Ana M Cabello; Laurent Coppola; Francisco M Cornejo-Castillo; Francesco d'Ovidio; Luc De Meester; Isabel Ferrera; Marie-José Garet-Delmas; Lionel Guidi; Elena Lara; Stéphane Pesant; Marta Royo-Llonch; Guillem Salazar; Pablo Sánchez; Marta Sebastian; Caroline Souffreau; Céline Dimier; Marc Picheral; Sarah Searson; Stefanie Kandels-Lewis; Gabriel Gorsky; Fabrice Not; Hiroyuki Ogata; Sabrina Speich; Lars Stemmann; Jean Weissenbach; Patrick Wincker; Silvia G Acinas; Shinichi Sunagawa; Peer Bork; Matthew B Sullivan; Eric Karsenti; Chris Bowler; Colomban de Vargas; Jeroen Raes; Tara Oceans Coordinators

doi:10.1126/science.1262073

Ocean plankton. Determinants of community structure in the global plankton interactome

Gipsi Lima-Mendez, Karoline Faust, Nicolas Henry, Johan Decelle, Sébastien Colin, Fabrizio Carcillo, Samuel Chaffron, J Cesar Ignacio-Espinosa, Simon Roux, Flora Vincent, Lucie Bittner, Youssef Darzi, Jun Wang, Stéphane Audic, Léo Berline, Gianluca Bontempi, Ana M Cabello, Laurent Coppola, Francisco M Cornejo-Castillo, Francesco d'OvidioLuc De Meester, Isabel Ferrera, Marie-José Garet-Delmas, Lionel Guidi, Elena Lara, Stéphane Pesant, Marta Royo-Llonch, Guillem Salazar, Pablo Sánchez, Marta Sebastian, Caroline Souffreau, Céline Dimier, Marc Picheral, Sarah Searson, Stefanie Kandels-Lewis, Gabriel Gorsky, Fabrice Not, Hiroyuki Ogata, Sabrina Speich, Lars Stemmann, Jean Weissenbach, Patrick Wincker, Silvia G Acinas, Shinichi Sunagawa, Peer Bork, Matthew B Sullivan, Eric Karsenti, Chris Bowler, Colomban de Vargas, Jeroen Raes, Tara Oceans Coordinators

Research output: Contribution to journal › Article › peer-review

575 Citations (Scopus)

Abstract

Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.

Original language	English
Pages (from-to)	1262073
Journal	Science
Volume	348
Issue number	6237
DOIs	https://doi.org/10.1126/science.1262073
Publication status	Published - 2015

Keywords

Animals
Food Chain
Host Specificity
Oceans and Seas
Phylogeny
Plankton
Platyhelminths
Sunlight
Symbiosis
Viruses

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10.1126/science.1262073

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Lima-Mendez, G., Faust, K., Henry, N., Decelle, J., Colin, S., Carcillo, F., Chaffron, S., Ignacio-Espinosa, J. C., Roux, S., Vincent, F., Bittner, L., Darzi, Y., Wang, J., Audic, S., Berline, L., Bontempi, G., Cabello, A. M., Coppola, L., Cornejo-Castillo, F. M., ... Tara Oceans Coordinators (2015). Ocean plankton. Determinants of community structure in the global plankton interactome. Science, 348(6237), 1262073. https://doi.org/10.1126/science.1262073

Lima-Mendez, Gipsi ; Faust, Karoline ; Henry, Nicolas ; Decelle, Johan ; Colin, Sébastien ; Carcillo, Fabrizio ; Chaffron, Samuel ; Ignacio-Espinosa, J Cesar ; Roux, Simon ; Vincent, Flora ; Bittner, Lucie ; Darzi, Youssef ; Wang, Jun ; Audic, Stéphane ; Berline, Léo ; Bontempi, Gianluca ; Cabello, Ana M ; Coppola, Laurent ; Cornejo-Castillo, Francisco M ; d'Ovidio, Francesco ; De Meester, Luc ; Ferrera, Isabel ; Garet-Delmas, Marie-José ; Guidi, Lionel ; Lara, Elena ; Pesant, Stéphane ; Royo-Llonch, Marta ; Salazar, Guillem ; Sánchez, Pablo ; Sebastian, Marta ; Souffreau, Caroline ; Dimier, Céline ; Picheral, Marc ; Searson, Sarah ; Kandels-Lewis, Stefanie ; Gorsky, Gabriel ; Not, Fabrice ; Ogata, Hiroyuki ; Speich, Sabrina ; Stemmann, Lars ; Weissenbach, Jean ; Wincker, Patrick ; Acinas, Silvia G ; Sunagawa, Shinichi ; Bork, Peer ; Sullivan, Matthew B ; Karsenti, Eric ; Bowler, Chris ; de Vargas, Colomban ; Raes, Jeroen ; Tara Oceans Coordinators. / Ocean plankton. Determinants of community structure in the global plankton interactome. In: Science. 2015 ; Vol. 348, No. 6237. pp. 1262073.

@article{9923d2ea1872414490c8ac2f76da930b,

title = "Ocean plankton. Determinants of community structure in the global plankton interactome",

abstract = "Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.",

keywords = "Animals, Food Chain, Host Specificity, Oceans and Seas, Phylogeny, Plankton, Platyhelminths, Sunlight, Symbiosis, Viruses",

author = "Gipsi Lima-Mendez and Karoline Faust and Nicolas Henry and Johan Decelle and S{\'e}bastien Colin and Fabrizio Carcillo and Samuel Chaffron and Ignacio-Espinosa, {J Cesar} and Simon Roux and Flora Vincent and Lucie Bittner and Youssef Darzi and Jun Wang and St{\'e}phane Audic and L{\'e}o Berline and Gianluca Bontempi and Cabello, {Ana M} and Laurent Coppola and Cornejo-Castillo, {Francisco M} and Francesco d'Ovidio and {De Meester}, Luc and Isabel Ferrera and Marie-Jos{\'e} Garet-Delmas and Lionel Guidi and Elena Lara and St{\'e}phane Pesant and Marta Royo-Llonch and Guillem Salazar and Pablo S{\'a}nchez and Marta Sebastian and Caroline Souffreau and C{\'e}line Dimier and Marc Picheral and Sarah Searson and Stefanie Kandels-Lewis and Gabriel Gorsky and Fabrice Not and Hiroyuki Ogata and Sabrina Speich and Lars Stemmann and Jean Weissenbach and Patrick Wincker and Acinas, {Silvia G} and Shinichi Sunagawa and Peer Bork and Sullivan, {Matthew B} and Eric Karsenti and Chris Bowler and {de Vargas}, Colomban and Jeroen Raes and {Tara Oceans Coordinators}",

note = "Copyright {\textcopyright} 2015, American Association for the Advancement of Science.",

year = "2015",

doi = "10.1126/science.1262073",

language = "English",

volume = "348",

pages = "1262073",

journal = "Science",

issn = "0036-8075",

publisher = "American Association for the Advancement of Science",

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Lima-Mendez, G, Faust, K, Henry, N, Decelle, J, Colin, S, Carcillo, F, Chaffron, S, Ignacio-Espinosa, JC, Roux, S, Vincent, F, Bittner, L, Darzi, Y, Wang, J, Audic, S, Berline, L, Bontempi, G, Cabello, AM, Coppola, L, Cornejo-Castillo, FM, d'Ovidio, F, De Meester, L, Ferrera, I, Garet-Delmas, M-J, Guidi, L, Lara, E, Pesant, S, Royo-Llonch, M, Salazar, G, Sánchez, P, Sebastian, M, Souffreau, C, Dimier, C, Picheral, M, Searson, S, Kandels-Lewis, S, Gorsky, G, Not, F, Ogata, H, Speich, S, Stemmann, L, Weissenbach, J, Wincker, P, Acinas, SG, Sunagawa, S, Bork, P, Sullivan, MB, Karsenti, E, Bowler, C, de Vargas, C, Raes, J & Tara Oceans Coordinators 2015, 'Ocean plankton. Determinants of community structure in the global plankton interactome', Science, vol. 348, no. 6237, pp. 1262073. https://doi.org/10.1126/science.1262073

Ocean plankton. Determinants of community structure in the global plankton interactome. / Lima-Mendez, Gipsi; Faust, Karoline; Henry, Nicolas; Decelle, Johan; Colin, Sébastien; Carcillo, Fabrizio; Chaffron, Samuel; Ignacio-Espinosa, J Cesar; Roux, Simon; Vincent, Flora; Bittner, Lucie; Darzi, Youssef; Wang, Jun; Audic, Stéphane; Berline, Léo; Bontempi, Gianluca; Cabello, Ana M; Coppola, Laurent; Cornejo-Castillo, Francisco M; d'Ovidio, Francesco; De Meester, Luc; Ferrera, Isabel; Garet-Delmas, Marie-José; Guidi, Lionel; Lara, Elena; Pesant, Stéphane; Royo-Llonch, Marta; Salazar, Guillem; Sánchez, Pablo; Sebastian, Marta; Souffreau, Caroline; Dimier, Céline; Picheral, Marc; Searson, Sarah; Kandels-Lewis, Stefanie; Gorsky, Gabriel; Not, Fabrice; Ogata, Hiroyuki; Speich, Sabrina; Stemmann, Lars; Weissenbach, Jean; Wincker, Patrick; Acinas, Silvia G; Sunagawa, Shinichi; Bork, Peer; Sullivan, Matthew B; Karsenti, Eric; Bowler, Chris; de Vargas, Colomban; Raes, Jeroen; Tara Oceans Coordinators.

In: Science, Vol. 348, No. 6237, 2015, p. 1262073.

Research output: Contribution to journal › Article › peer-review

TY - JOUR

T1 - Ocean plankton. Determinants of community structure in the global plankton interactome

AU - Lima-Mendez, Gipsi

AU - Faust, Karoline

AU - Henry, Nicolas

AU - Decelle, Johan

AU - Colin, Sébastien

AU - Carcillo, Fabrizio

AU - Chaffron, Samuel

AU - Ignacio-Espinosa, J Cesar

AU - Roux, Simon

AU - Vincent, Flora

AU - Bittner, Lucie

AU - Darzi, Youssef

AU - Wang, Jun

AU - Audic, Stéphane

AU - Berline, Léo

AU - Bontempi, Gianluca

AU - Cabello, Ana M

AU - Coppola, Laurent

AU - Cornejo-Castillo, Francisco M

AU - d'Ovidio, Francesco

AU - De Meester, Luc

AU - Ferrera, Isabel

AU - Garet-Delmas, Marie-José

AU - Guidi, Lionel

AU - Lara, Elena

AU - Pesant, Stéphane

AU - Royo-Llonch, Marta

AU - Salazar, Guillem

AU - Sánchez, Pablo

AU - Sebastian, Marta

AU - Souffreau, Caroline

AU - Dimier, Céline

AU - Picheral, Marc

AU - Searson, Sarah

AU - Kandels-Lewis, Stefanie

AU - Gorsky, Gabriel

AU - Not, Fabrice

AU - Ogata, Hiroyuki

AU - Speich, Sabrina

AU - Stemmann, Lars

AU - Weissenbach, Jean

AU - Wincker, Patrick

AU - Acinas, Silvia G

AU - Sunagawa, Shinichi

AU - Bork, Peer

AU - Sullivan, Matthew B

AU - Karsenti, Eric

AU - Bowler, Chris

AU - de Vargas, Colomban

AU - Raes, Jeroen

AU - Tara Oceans Coordinators

PY - 2015

Y1 - 2015

N2 - Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.

AB - Species interaction networks are shaped by abiotic and biotic factors. Here, as part of the Tara Oceans project, we studied the photic zone interactome using environmental factors and organismal abundance profiles and found that environmental factors are incomplete predictors of community structure. We found associations across plankton functional types and phylogenetic groups to be nonrandomly distributed on the network and driven by both local and global patterns. We identified interactions among grazers, primary producers, viruses, and (mainly parasitic) symbionts and validated network-generated hypotheses using microscopy to confirm symbiotic relationships. We have thus provided a resource to support further research on ocean food webs and integrating biological components into ocean models.

KW - Animals

KW - Food Chain

KW - Host Specificity

KW - Oceans and Seas

KW - Phylogeny

KW - Plankton

KW - Platyhelminths

KW - Sunlight

KW - Symbiosis

KW - Viruses

U2 - 10.1126/science.1262073

DO - 10.1126/science.1262073

M3 - Article

C2 - 25999517

VL - 348

SP - 1262073

JO - Science

JF - Science

SN - 0036-8075

IS - 6237

ER -

Ocean plankton. Determinants of community structure in the global plankton interactome

Abstract

Keywords

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