TY - JOUR
T1 - Tryp
T2 - a dataset of microscopy images of unstained thick blood smears for trypanosome detection
AU - Anzaku, Esla Timothy
AU - Mohammed, Mohammed Aliy
AU - Ozbulak, Utku
AU - Won, Jongbum
AU - Hong, Hyesoo
AU - Krishnamoorthy, Janarthanan
AU - Van Hoecke, Sofie
AU - Magez, Stefan
AU - Van Messem, Arnout
AU - De Neve, Wesley
N1 - © 2023. Springer Nature Limited.
PY - 2023
Y1 - 2023
N2 - Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intelligence has shown promising results in disease screening, the lack of curated datasets impedes progress. In response to this challenge, we developed the Tryp dataset, comprising microscopy images of unstained thick blood smears containing the Trypanosoma brucei brucei parasite. The Tryp dataset provides bounding box annotations for tightly enclosed regions containing the parasite for 3,085 positive images, and 93 images collected from negative blood samples. The Tryp dataset represents the largest of its kind. Furthermore, we provide a benchmark on three leading deep learning-based object detection techniques that demonstrate the feasibility of AI for this task. Overall, the availability of the Tryp dataset is expected to facilitate research advancements in diagnostic screening for this disease, which may lead to improved healthcare outcomes for the communities impacted.
AB - Trypanosomiasis, a neglected tropical disease (NTD), challenges communities in sub-Saharan Africa and Latin America. The World Health Organization underscores the need for practical, field-adaptable diagnostics and rapid screening tools to address the negative impact of NTDs. While artificial intelligence has shown promising results in disease screening, the lack of curated datasets impedes progress. In response to this challenge, we developed the Tryp dataset, comprising microscopy images of unstained thick blood smears containing the Trypanosoma brucei brucei parasite. The Tryp dataset provides bounding box annotations for tightly enclosed regions containing the parasite for 3,085 positive images, and 93 images collected from negative blood samples. The Tryp dataset represents the largest of its kind. Furthermore, we provide a benchmark on three leading deep learning-based object detection techniques that demonstrate the feasibility of AI for this task. Overall, the availability of the Tryp dataset is expected to facilitate research advancements in diagnostic screening for this disease, which may lead to improved healthcare outcomes for the communities impacted.
KW - Animals
KW - Humans
KW - Artificial Intelligence
KW - Microscopy
KW - Neglected Diseases
KW - Trypanosoma
KW - Trypanosoma brucei brucei
KW - Trypanosomiasis, African/diagnosis
UR - http://www.scopus.com/inward/record.url?scp=85174466474&partnerID=8YFLogxK
U2 - 10.1038/s41597-023-02608-y
DO - 10.1038/s41597-023-02608-y
M3 - Article
C2 - 37853038
SN - 2052-4463
VL - 10
JO - Scientific Data
JF - Scientific Data
IS - 1
M1 - 716
ER -