Microbiologie

Onderzoeksoutput

Onderzoeksoutput per jaar 1970 2021

• 10865 Citaties
• 47 h-Index
• 244 Article
• 64 Meeting abstract (Book)
• 36 Poster
• 8 Scientific review
• 27 Meer
  • 7 Chapter
  • 7 Unpublished abstract
  • 4 Book
  • 4 Conference paper
  • 2 Other contribution
  • 1 Other report
  • 1 Editorial
  • 1 Working paper

Onderzoeksoutput per jaar

Onderzoeksoutput per jaar

Zoekresultaten

• 2010

  The Lrp Family of Transcription Regulators in Archaea

  Charlier, D. & Peeters, E., 30 nov 2010, In : Archaea. 2010, 10 blz.

  Onderzoeksoutput: Article

  • Archaea
  • Methanocaldococcus
  • transcription factors
  • Pyrococcus
  • family
  50 Citaten (Scopus)

• The protein-DNA contacts in RutR•carAB operator complexes.

  Nguyen Le Minh, P., Maes, D., Charlier, D. & Bervoets, I., 14 mei 2010, In : Nucleic Acids Research. 38, blz. 6286-6300 15 blz.

  Onderzoeksoutput: Article

  • DNA
  • uridine monophosphate kinase
  • Glutamyl Aminopeptidase
  • Integration Host Factors
  • Proteins

• The protein-DNA contcacts in RutR-carAB operator complexes

  Nguyen Le Minh, P., Bervoets, I., Maes, D. & Charlier, D., 2010, In : Nucleic Acids Research. 38, 18, blz. 6286-6300 15 blz.

  Onderzoeksoutput: Article

  Open Access

  Bestand

  • DNA
  • uridine monophosphate kinase
  • Glutamyl Aminopeptidase
  • Integration Host Factors
  • Proteins
  13 Citaten (Scopus)

  377 Downloads (Pure)

• Transient metabolic modeling of Escherichia coli MG1655 and MG1655 DeltaackA-pta, DeltapoxB Deltapppc ppc-p37 for recombinant beta-galactosidase production.

  De Mey, M., Lequeux, G. J., Beauprez, J., Maertens, J., Waegeman, H., Van Bogaert, I. N., Foulquie Moreno Maria, R., Charlier, D., Soetaert, W., Vanrolleghem, P. & Vandamme, E. J., 4 mei 2010, In : Journal Ind Microbiol Biotechnol. 37, blz. 793-803 11 blz.

  Onderzoeksoutput: Article

  • Galactosidases
  • Escherichia coli
  • beta-Galactosidase
  • Recombinant proteins
  • Fluxes
  2 Citaten (Scopus)

• Validation study of 24 deepwell microtiterplates to screen libraries of strains in metabolic engineering.

  Waegeman, H., Beauprez, J., Maertens, J., De Mey, M., Demolder, L., Foulquie Moreno Maria, R., Boon, N., Charlier, D. & Soetaert, W., 8 aug 2010, In : Journal of Bioscience and Bioengineering. 110, blz. 646-652 7 blz.

  Onderzoeksoutput: Article

  • Metabolic engineering
  • Metabolic Engineering
  • Bioreactors
  • Succinic Acid
  • Validation Studies
  9 Citaten (Scopus)
• 2009

  Competitive activation of the Escherichia coli argO gene coding for an arginine exporter by the transcriptional regulators Lrp and ArgP

  Peeters, E., Nguyen Le Minh, P., Foulquie Moreno Maria, R. & Charlier, D., 10 nov 2009, In : Molecular Microbiology. 74, blz. 1513-1526 14 blz.

  Onderzoeksoutput: Article

  • Leucine
  • Arginine
  • Escherichia coli
  • Transcriptional Activation
  • Genes
  18 Citaten (Scopus)

• Concentration-dependent dual regulatory effects by a transcription regulator from Sulfolobus solfataricus, analyzed by using an in vitro transcription system

  Peeters, E., Peixeiro, N., Forterre, P., Sezonov, G., Prangishvili, D. & Charlier, D., mei 2009, Meeting Belgian Society of Biochemistry and Molecular Biology 2009. (Meeting Belgian Society of Biochemistry and Molecular Biology 2009).

  Onderzoeksoutput: Meeting abstract (Book) › Research

  • Sulfolobus solfataricus
  • transcription factors
  • transcription (genetics)
  • promoter regions
  • regulatory proteins

• Glutamine-dependent DNA-binding of the archaeal Lrp-like transcription regulators Ss-Lrp and Sa-Lrp from the hyperthermoacidophiles Sulfolobus solfataricus and S. acidocaldarius

  Vassart, A., Peeters, E. & Charlier, D., mei 2009, Meeting Belgian Society of Biochemistry and Molecular Biology. (Meeting Belgian Society of Biochemistry and Molecular Biology).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • regulatory proteins
  • glutamine
  • leucine
  • transcription factors

• Glutamine-dependent DNA-binding of the transcriptional regulators Sa-Lrp and Ss-Lrp from Sulfolobus acidocaldarius and S. solfataricus

  Charlier, D., Vassart, A. & Peeters, E., jul 2009, Gordon Meeting: Archaea: Ecology, metabolism & molecular biology 2009. (Gordon Meeting: Archaea: Ecology, metabolism & molecular biology 2009).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus acidocaldarius
  • Glutamine
  • DNA

• Insights into the architecture and stoichiometry of Escherichia coli PepA-DNA complexes involved in transcriptional control and site-specific DNA recombination by atomic force microscopy.

  Nguyen Le Minh, P., Devroede, N., Massant, J., Maes, D. & Charlier, D., 9 jan 2009, In : Nucleic Acids Research. 37, blz. 1463-1476 14 blz.

  Onderzoeksoutput: Article

  • Nucleoproteins
  • Atomic Force Microscopy
  • Genetic Recombination
  • Glutamyl Aminopeptidase
  • Carbamyl Phosphate
  26 Citaten (Scopus)

• In vitro binding of an Lrp-like transcription regulator to the control region of the lysine biosynthesis operon in the hyperthermoacidophilic archaeon Sulfolobus acidocaldarius.

  Song, N., Peeters, E., Vassart, A. & Charlier, D., 2009, Meeting Belgian Society of Biochemistry and Molecular Biology. (Meeting Belgian Society of Biochemistry and Molecular Biology).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus
  • Archaea
  • operon
  • lysine
  • transcription factors

• L-glutamine dependent binding of the archaeal Lrp-like transcription regulator Sa-Lrp from the hyperthermoacidophile Sulfolobus acidocaldarius to different targets

  Vassart, A., Peeters, E. & Charlier, D., dec 2009, Meeting Belgian Society of Microbiology. (Meeting Belgian Society of Microbiology).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus
  • regulatory proteins
  • glutamine
  • leucine
  • transcription factors

• Molecular mechanisms of regulation by Ss-LrpB, a transcriptional regulator from the archaeon Sulfolobus solfataricus

  Peeters, E., Peixeiro, N., Marc, N., Forterre, P., Sezonov, G., Prangishvili, D. & Charlier, D., dec 2009, Meeting Belgian Society of Microbiology. (Meeting Belgian Society of Microbiology).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • Leucine-Responsive Regulatory Protein
  • Archaea
  • Archaeal Proteins
  • Membrane Transport Proteins

• Positive and negative regulation of transcription initiation by Ss-LrpB from Sulfolobus solfataricus.

  Peeters, E., Peixeiro, N., Forterre, P., Sezonov, G., Prangishvili, D. & Charlier, D., jul 2009, Gordon Meeting: Archaea: Ecology, metabolism & molecular biology 2009. (Gordon Meeting: Archaea: Ecology, metabolism & molecular biology 2009).

  Onderzoeksoutput: Meeting abstract (Book) › Research

  • Sulfolobus solfataricus
  • Genetic Operator Regions
  • Genes
  • Binding Sites
  • Operon

• Rejuvenation of CcdB-poisoned gyrase by an intrinsically disordered protein domain

  De Jonge, N., Garcia Pino, A., Buts, L., Haesaerts, S., Charlier, D., Zangger, K., Wyns, L., De Greve, H. & Loris, R., 2009, In : Mol. Cell. 35, blz. 154-163 10 blz.

  Onderzoeksoutput: Article

  • Intrinsically Disordered Proteins
  • Antitoxins
  • Rejuvenation
  • Protein Domains
  • F Factor
  101 Citaten (Scopus)

• Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus, regulates a gene cluster with a pyruvate ferredoxin oxidoreductase operon and permease genes

  Peeters, E., Albers, S., Vassart, A., Driessen, A. & Charlier, D., 2009, In : Molecular Microbiology. 71, blz. 972-988 17 blz.

  Onderzoeksoutput: Article

  • Pyruvate Synthase
  • Sulfolobus solfataricus
  • Membrane Transport Proteins
  • Operon
  • Multigene Family
  34 Citaten (Scopus)

• The conflict between horizontal gene transfer and the safeguard of identity: origin of meiotic sexuality

  Glansdorff, N., Xu, Y. & Labedan, B., 26 sep 2009, In : J Mol Evol. 69, blz. 470-480 11 blz.

  Onderzoeksoutput: Article

  • gene transfer
  • Horizontal Gene Transfer
  • Sexuality
  • horizontal gene transfer
  • Conflict (Psychology)
  11 Citaten (Scopus)

• The origin of life and the last universal common ancestor: do we need a change of perspective?

  Glansdorff, N., Xu, Y. & Labedan, B., 27 mei 2009, In : Research in Microbiology. 160, blz. 522-528 7 blz.

  Onderzoeksoutput: Article

  • Origin of Life
  • Genetic Code
  • Prebiotics
  • Heuristics
  • Crowns
  19 Citaten (Scopus)
• 2008

  Arginine biosynthesis in Escherichia coli: experimental perturbation and mathematical modeling

  Caldara, M., Dupont, G., Leroy, F., Goldbeter, A., De Vuyst, L., Cunin, R. & Chemistry, J. O. B. (redactie), apr 2008, In : Journal of Biological Chemistry. 283, blz. 6347-6358 12 blz.

  Onderzoeksoutput: Article

  • Biosynthesis
  • Escherichia coli
  • Arginine
  • Metabolites
  • pyrimidine
  35 Citaten (Scopus)

• Cadmium-induced transcriptional and enzymatic alterations related to oxidative stress

  Smeets, K., Ruytinx, J., Semane, B., Belleghem, F. V., Remans, T., Sanden, S. V., Vangronsveld, J. & Cuypers, A., mei 2008, In : Environmental and Experimental Botany. 63, 1-3, blz. 1-8 8 blz.

  Onderzoeksoutput: Article
  150 Citaten (Scopus)

• Characterization of the physiological role of an Lrp-like regulator of Sulfolobus solfataricus

  Peeters, E., Albers, S. & Charlier, D., 2008, 'Molecular Biology of Archaea' Abstract book.

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • Membrane Transport Proteins
  • Genes
  • Pyruvate Synthase
  • Binding Sites

• Critical evaluation and statistical validation of a hydroponic culture system for Arabidopsis thaliana

  Smeets, K., Ruytinx, J., Van Belleghem, F., Semane, B., Lin, D., Vangronsveld, J. & Cuypers, A., feb 2008, In : Plant Physiology & Biochemistry. 46, 2, blz. 212-218 7 blz.

  Onderzoeksoutput: Article

  • Hydroponics
  • Arabidopsis
  • hydroponics
  • Arabidopsis thaliana
  • aeration
  54 Citaten (Scopus)

• Crystal structure of a cold-adapted class C-beta lactamase

  Michaux, C., Massant, J., Kerff, F., Frère, J-M., Docquier, J-D., Vandenberghe, I., Samyn, B., Pierrard, A., Feller, G., Charlier, P., Van Beeumen, J. & Wouters, J., 6 feb 2008, In : The FEBS Journal. 275, blz. 1687-1697 11 blz.

  Onderzoeksoutput: Article

  • Crystal structure
  • beta-Lactamases
  • Enzymes
  • Hydrogen bonds
  • Proline
  33 Citaten (Scopus)

• In vitro binding of Ss-LrpB from Sulfolobus solfataricus to potential target sites

  Vassart, A., Peeters, E., Van Oeffelen, L. & Charlier, D., 2008, 'Molecular Biology of Archaea' Abstract book.

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • In Vitro Techniques

• In vivo characterization of the physiological role of a transcriptional regulator from the archaeon Sulfolobus solfataricus

  Peeters, E., Albers, S., Vassart, A. & Charlier, D., 2008, 'Meeting Belgian Society of Microbiology' abstract book. ('Meeting Belgian Society of Microbiology' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • Archaea
  • Membrane Transport Proteins
  • Genes
  • Binding Sites

• The last universal common ancestor: emergence, constitution and genetic legacy of an elusive forerunner

  Glansdorff, N., Xu, Y. & Labedan, B., 9 jul 2008, In : Biology Direct. 3, blz. 1-35 35 blz.

  Onderzoeksoutput: Article

  • Symbiosis
  • Constitution and Bylaws
  • Archaea
  • eukaryote
  • Atmosphere
  156 Citaten (Scopus)

• Transcriptional regulation of arginine transport genes in Escherichia coli

  Charlier, D., Foulquie Moreno Maria, R., Peeters, E. & Nguyen Le Minh, P., 2008, 'International conference on arginine and pyrimidines' abstract book. ('International conference on arginine and pyrimidines' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • arginine
  • Escherichia coli
  • genes

• Unravelling the physiological function of an archaeal transcription regulator

  Peeters, E., Albers, S., Van Oeffelen, L. & Charlier, D., 2008, 'Molecular Microbiology Young Scientists' Minisymposium' abstract book. ('Molecular Microbiology Young Scientists' Minisymposium' abstract book).

  Onderzoeksoutput: Meeting abstract (Book) › Research
• 2007

  Analysis of the DNA-binding sequence specificity of the archaeal transcriptional regulator Ss-LrpB from Sulfolobus solfataricus by systematic mutagenesis and high resolution contact probing

  Peeters, E., Wartel, C., Maes, D., Charlier, D. & Journals, O. (redactie), 1 jan 2007, In : Nucleic Acids Research. 35, january 2007, blz. 623-633 11 blz.

  Onderzoeksoutput: Article

  • Sulfolobus solfataricus
  • DNA Sequence Analysis
  • Mutagenesis
  • Position-Specific Scoring Matrices
  • Hydrogen Bonding
  18 Citaten (Scopus)

• DNA-binding sequence specificity of Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus

  Peeters, E., Maes, D. & Charlier, D., 2007, 'Meeting Belgian Society of Microbiology' abstract book. ('Meeting Belgian Society of Microbiology' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus

• DNA-binding specificity of Ss-LrpB, a transcriptional regulator from Sulfolobus solfataricus

  Peeters, E., Maes, D. & Charlier, D., 2007, 'Gordon Research Conference Archaea:Ecology, metabolism and molecular biology' abstract book. ('Gordon Research Conference Archaea:Ecology, metabolism and molecular biology' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • DNA

• Gene expression profiling of a Zn-tolerant and a Zn-sensitive Suillus luteus isolate exposed to increased external zinc concentrations

  Muller, L. A. H., Craciun, A. R., Ruytinx, J., Lambaerts, M., Verbruggen, N., Vangronsveld, J. & Colpaert, J. V., 2007, In : Mycorrhiza. 17, 7, blz. 571-580 10 blz.

  Onderzoeksoutput: Article

  • Gene Expression Profiling
  • Zinc
  • Genes
  • Basidiomycota
  • Heavy Metals
  17 Citaten (Scopus)

• How thermophiles cope with thermolabile metabolites

  Massant, J. & Glansdorff, N. (redactie), 2007, American Society for Microbiology. Gerday, C. & Glansdorff, N. (redactie). ASM Press, blz. 57-74 18 blz.

  Onderzoeksoutput: Chapter › Research › peer review

• Lrp-like transcriptional regulators in Sulfolobus solfataricus

  Peeters, E., Maes, D. & Charlier, D., 2007, 'Thermophiles 2007' abstract book. ('Thermophiles 2007' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus

• Physiology and Biochemistry of Extremophiles

  Glansdorff, N. (redactie), Gerday, C. (redactie), Gerday, C. (redactie) & Glansdorff, N. (redactie), 2007, American Society for Microbiology redactie ASM Press. 429 blz.

  Onderzoeksoutput: Book › Research

  • Exobiology
  • Biochemistry
  • Physiology

• Surprising arginine biosynthesis: a reappraisal of the enzymology and evolution of the pathway in microorganisms

  Xu, Y., Labedan, B. & Glansdorff, N., 1 mrt 2007, In : Microbiology and Molecular Biology Reviews. 71, blz. 36-47 12 blz.

  Onderzoeksoutput: Article

  • Arginine
  75 Citaten (Scopus)
• 2006

  Binding site specificity of the transcriptional regulator Ss-LrpB from Sulfolobus solfataricus and identification of Ss-LrpB regulated genes and operons

  Charlier, D., Wartel, C. & Peeters, E., 2006, Extremophiles 2006 abstract book. (Extremophiles 2006 abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • operon
  • binding sites
  • transcription factors
  • surface plasmon resonance

• Bioinformatic analysis of an unusual gene-enzyme relationship in the arginine biosynthetic pathway amon marine gamma proteobacteria: implications concerning the formation of N-acetylated intermediates in prokaryotes.

  Xu, Y., Glansdorff, N. & Labedan, B., 12 jan 2006, In : BMC Genomics. 7, blz. 1-12 12 blz.

  Onderzoeksoutput: Article

  • Gammaproteobacteria
  • Biosynthetic Pathways
  • Computational Biology
  • Arginine
  • Moritella

• Crystallization and preliminary X-ray diffraction analysis of the arginine repressor of the hyperthermophile Thermotoga neapolitana

  Massant, J., Peeters, E., Charlier, D. & Maes, D., 16 dec 2006, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. F62, blz. 26-28 3 blz.

  Onderzoeksoutput: Article

  • Thermotoga neapolitana
  • Co-Repressor Proteins
  • X ray diffraction analysis
  • Crystallization
  • X-Ray Diffraction

• Crystallization and preliminary X-ray diffraction analysis of the C-terminal domain of an archaeal transcription regulator

  Peeters, E., Charlier, D. & Maes, D., 2006, 23rd European Crystallography Meeting abstract book. (23rd European Crystallography Meeting abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Crystallization
  • X-Ray Diffraction

• Crystallization of ornithine acetyltransferase from yeast by counter-diffusion and preliminary X-ray study

  Maes, D., Crabeel, M., Van De Weerdt, C., Martial, J., Peeters, E., Charlier, D., Decanniere, K., Vanhee, C., Wyns, L. & Zegers, I., 2006, In : Acta Crystallographica Section F. F62, blz. 1294-1297 4 blz.

  Onderzoeksoutput: Article

  • glutamate acetyltransferase
  • Crystallization
  • yeast
  • Yeast
  • Crystals
  1 Citaat (Scopus)

• Mutational analysis of intervening sequences connecting the binding sites for Integration Host factor, PepA, PurR, and RNA polymerase in the control region of the Escherichia coli carAB operon, encoding carbamoylphosphate synthase.

  Devroede, N., Huysveld, N. & Charlier, D., 2006, In : Journal of Bacteriology. 188, blz. 3236-3245 10 blz.

  Onderzoeksoutput: Article

  16 Citaten (Scopus)

• Structural analysis of Ss-LrpB and Ss-LrpB:DNA complexes

  Peeters, E., Willaert, R., Maes, D. & Charlier, D., 2006, Extremophiles 2006 abstract book. (Extremophiles 2006 abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • operator regions
  • DNA
  • atomic force microscopy
  • DNA conformation
  • autoregulation

• Transcription regulation in Archaea: unraveling function and structure of the transcriptional regulator Ss-LrpB from Sulfolobus solfataricus

  Peeters, E., Maes, D. & Charlier, D., 2006, 'Meeting Belgian Society of Biochemistry and Molecular Biology' abstract book. ('Meeting Belgian Society of Biochemistry and Molecular Biology' abstract book).

  Onderzoeksoutput: Meeting abstract (Book)

  • Sulfolobus solfataricus
  • Archaea
• 2005

  A consensus sequence for binding of Ss-LrpB, a transcription regulator from Sulfolobus solfataricus.

  Peeters, E., Wartel, C. & Charlier, D., 2005, 191st Meeting of the Belgian Society of Biochemistry and Molecular Biology.

  Onderzoeksoutput: Meeting abstract (Book)

• Analysis of binding site specificity and linker length in cooperative binding of Ss-LrpB from Sulfolobus solfataricus to three targets in its own control region

  Charlier, D., Maes, D. & Peeters, E., 2005, GRC Archaea: Ecology, metabolism and molecular biology 2005 abstract book. (GRC Archaea: Ecology, metabolism and molecular biology 2005 abstract book).

  Onderzoeksoutput: Meeting abstract (Book) › Research

  • Sulfolobus solfataricus
  • Binding Sites

• A novel pyrimidine-specific regulatory target in the Escherichia coli carAB operon encoding carbamoylphosphate synthetase

  Devroede, N., Huysveld, N. & Charlier, D., 2005, 191st Meeting of the Belgian Society of Biochemistry and Molecular Biology.

  Onderzoeksoutput: Meeting abstract (Book)

• Arginine-specific regulation in the hyperthermophile Thermotoga neapolitana

  Massant, J., Peeters, E., Charlier, D. & Maes, D., 2005, 191st Meeting of the Belgian Society of Biochemistry and Molecular Biology.

  Onderzoeksoutput: Meeting abstract (Book)

• Aspartate transcarbamylase from the hyperthermophilic archaeon Pyrococcus abyssi : insights into cooperative and allosteric mechanisms

  Van Boxstael, S., Maes, D. & Cunin, R., 2005, In : Unknown Journal.

  Onderzoeksoutput: Article

  2 Citaten (Scopus)

• Atomic Force Microscopy analysis of nucleoprotein complexes formed by Ss-LrpB, a transcription regulator from Sulfolobus solfataricus

  Peeters, E., Willaert, R. & Charlier, D., 2005, Annual meeting of the Belgian Society for Microbiology, book of abstracts p. 54.

  Onderzoeksoutput: Meeting abstract (Book)