Projecten per jaar
Persoonlijk profiel
Expertise
Structural Bioinformatics and computational biology
- Prediction of biophysical characteristics of proteins from their sequence
- Effect of amino acid variants on proteins and organisms
Computational aspects of Nuclear Magnetic Resonance (NMR)
- Statistical analysis of NMR data in relation to protein structure
- Structure determination of proteins from experimental NMR data
Opleiding / Academische kwalificatie
Chemistry, Ph.D., Ghent University
1 dec 1992 → 19 dec 1996
Datum van toekenning: 19 dec 1996
Externe posities
VUB director, Interuniversity Institute of Bioinformatics in Brussels
apr 2014 → …
Maitre d'enseignement, Université libre de Bruxelles
2011 → …
Scientific officer (NMR), European Bioinformatics Institute
1 okt 2001 → 30 sep 2010
Research Fellow, Biotechnology Research Institute, National Research Council, Montreal
1 jan 2000 → 31 aug 2001
Postdoctoral researcher, Université libre de Bruxelles
1 jan 1999 → 31 dec 1999
Postdoctoral researcher, Biotechnology Research Institute, National Research Council, Montreal
1 jan 1997 → 31 dec 1998
Vingerafdruk
Verdiep u in de onderzoeksgebieden waarop Wim Vranken actief is. Deze onderwerplabels komen uit het werk van deze persoon. Samen vormen ze een unieke vingerafdruk.
- 1 Soortgelijke profielen
Samenwerkingen en hoofdonderzoeksgebieden uit de afgelopen vijf jaar
Recente externe samenwerking op landen-/regioniveau. Duik in de details door op de stippen te klikken of
-
OZR4184: OZR Ad hoc financiering: ELIXIR Infrastructuur voor Data en Services om Life-Sciences Onderzoek in Vlaanderen te versterken
1/01/23 → 31/12/26
Project: Fundamenteel
-
FWOIRI14: ELIXIR Infrastructuur voor Data en Services om Life-Sciences Onderzoek in Vlaanderen te versterken
1/01/23 → 31/12/26
Project: Fundamenteel
-
SRP91: SRP-Groeifinanciering: Synthetische biologie voor de ontwikkeling van microbiële celfabrieken
Peeters, E., Vranken, W. & de Buyl, S.
1/10/22 → 30/09/27
Project: Fundamenteel
-
Onderzoeksoutput
-
Deciphering the RRM-RNA recognition code: A computational analysis
Roca Martinez, J., Dhondge, H. B., Sattler, M. & Vranken, W., 23 jan 2023, In: PLoS Computational Biology. 19, 1, 24 blz., e1010859.Onderzoeksoutput: Article › peer review
Open AccessBestand2 Citaten (Scopus)6 Downloads (Pure) -
Deep mutational scanning of essential bacterial proteins can guide antibiotic development
Dewachter, L., Brooks, A. N., Noon, K., Cialek, C., Clark-ElSayed, A., Schalck, T., Krishnamurthy, N., Versées, W., Vranken, W. & Michiels, J., 16 jan 2023, In: Nature Communications. 14, 1, 16 blz., 241.Onderzoeksoutput: Article › peer review
Open AccessBestand4 Citaten (Scopus)39 Downloads (Pure) -
Design of novel chimeric GPCRs: Identification of equivalent regions at the sequence, structural and biophysical level
Crauwels, C. & Vranken, W., 2 aug 2023, (Unpublished).Onderzoeksoutput: Poster
-
Evolution of CRISPR-associated endonucleases as inferred from resurrected proteins
Alonso-Lerma, B., Jabalera, Y., Samperio, S., Morin, M., Fernandez, A., Hille, L. T., Silverstein, R. A., Quesada-Ganuza, A., Reifs, A., Fernández-Peñalver, S., Benitez, Y., Soletto, L., Gavira, J. A., Diaz, A., Vranken, W., Sanchez-Mejias, A., Güell, M., Mojica, F. J. M., Kleinstiver, B. P., Moreno-Pelayo, M. A. & 2 anderen, , jan 2023, In: Nature Microbiology. 8, 1, blz. 77-90 14 blz.Onderzoeksoutput: Article › peer review
3 Citaten (Scopus) -
A roadmap to scientific software deployment: bio2Byte Tools as a use case
Gavalda Garcia, J., Díaz, A. & Vranken, W., 11 mrt 2022.Onderzoeksoutput: Poster
Open Access
Datasets
-
Prediction of Conformational Variability for RRM proteins in inter3m data base
Gavalda Garcia, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 14 feb 2023
DOI: 10.5281/zenodo.7640833, https://doi.org/10.5281/zenodo.7640833
Dataset
-
Protein ambiguity
Lazar, T. (Creator), Roca Martinez, J. (Researcher), Pancsa, R. (Creator) & Vranken, W. (Supervisor), Frontiers in Molecular Biosciences, 3 aug 2022
DOI: 10.3389/fmolb.2022.959956, https://bitbucket.org/bio2byte/protein_ambiguity/src/master/
Dataset
-
RRMScorer datasets
Roca Martinez, J. (Creator), Vranken, W. (Supervisor) & Dhondge, H. B. (Data Collector), PLOS Computational Biology, 28 jun 2022
DOI: 10.1371/journal.pcbi.1010859, https://bitbucket.org/bio2byte/rrmscorer/src/master/Supplementary_information/
Dataset
-
Bio2Byte SARS-CoV-2
Kagami, L. P. (Creator), Roca Martinez, J. (Creator), Gavalda Garcia, J. (Creator), Ramasamy, P. (Creator), Feenstra, K. A. (Creator) & Vranken, W. (Supervisor), BMC Molecular and Cell Biology, 7 dec 2020
DOI: 10.1186/s12860-021-00362-w, https://bio2byte.be/sars2/
Dataset
-
ConforMine Molecular Dynamics Data: Conformational Variability, Secondary Structure Propensities and Molecular Dynamics Simulations
Gavalda Garcia, J. (Creator), Roca Martinez, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 2023
DOI: 10.5281/zenodo.7575777, https://doi.org/10.5281/zenodo.7575777
Dataset
Activiteiten
-
Toegepaste Biologische Wetenschappen (Organisatie)
Eveline Peeters (Supervisor), Wim Vranken (Supervisor), Dominique Maes (Chair), Charles Van der Henst (Jury), Geert Angenon (Jury), Kiavash Movahedi (Jury), Sébastien Ferreira-Cerca (Jury) & Louis Droogmans (Jury)
9 mrt 2023Activiteit: Member of PhD committee
-
Toegepaste Biologische Wetenschappen (Organisatie)
Wim Vranken (Chair), Eveline Peeters (Jury), Jean-Pierre Hernalsteens (Jury), Jos Ruytinx (Jury), Geert Angenon (Supervisor), Sofie Goormachtig (Jury) & Elizabeth Kairuz Hernández-Díaz (Jury)
15 jun 2023Activiteit: Member of PhD committee
-
Netherlands Society on Biomolecular Modelling Fall Meeting
Jose Gavalda Garcia (Organiser), Joel Roca Martinez (Organiser), Charlotte Crauwels (Organiser), Konstantina Tzavella (Organiser) & Wim Vranken (Organiser)
27 okt 2022Activiteit: Participation in conference
-
Université libre de Bruxelles (Externe Organisatie)
Wim Versées (Jury), François Ancien (Presenter), Wim Vranken (Supervisor), Marianne Rooman (Supervisor) & Ann Nowe (Chair)
14 jan 2022Activiteit: Member of PhD committee
-
Vrije Universiteit Amsterdam (Externe Organisatie)
Wim Vranken (Examiner)
7 jan 2021Activiteit: Membership of peer-review panel or committee
Scriptie
-
Identification and characterization of putative transcriptional regulators in archaea
Auteur: Donvil, L., Peeters, E. & Vranken, W., 10 sep 2018Begeleider: Orlando, G. (Advisor), de Buyl, S. (Jury) & De Greve, H. (Jury)
Scriptie/Masterproef: Master's Thesis
-
Unravelling the microbial ecosystems of food-related brines through a metagenomics approach
Auteur: Vermote, L., Weckx, S., Peeters, E. & Vranken, W., jul 2016Scriptie/Masterproef: Master's Thesis