Projecten per jaar
Persoonlijk profiel
Expertise
Structural Bioinformatics and computational biology
- Prediction of biophysical characteristics of proteins from their sequence
- Effect of amino acid variants on proteins and organisms
Computational aspects of Nuclear Magnetic Resonance (NMR)
- Statistical analysis of NMR data in relation to protein structure
- Structure determination of proteins from experimental NMR data
Opleiding / Academische kwalificatie
Chemistry, Ph.D., Ghent University
1 dec 1992 → 19 dec 1996
Datum van toekenning: 19 dec 1996
Externe posities
VUB director, Interuniversity Institute of Bioinformatics in Brussels
apr 2014 → …Maitre d'enseignement, Université libre de Bruxelles
2011 → …Scientific officer (NMR), European Bioinformatics Institute
1 okt 2001 → 30 sep 2010Research Fellow, Biotechnology Research Institute, National Research Council, Montreal
1 jan 2000 → 31 aug 2001Postdoctoral researcher, Université libre de Bruxelles
1 jan 1999 → 31 dec 1999Postdoctoral researcher, Biotechnology Research Institute, National Research Council, Montreal
1 jan 1997 → 31 dec 1998Vingerafdruk
Verdiep u in de onderzoeksgebieden waarop Wim Vranken actief is. Deze onderwerplabels komen uit het werk van deze persoon. Samen vormen ze een unieke vingerafdruk.
- 1 Soortgelijke profielen
Netwerk
Recente externe samenwerking op landen-/regioniveau. Duik in de details door op de stippen te klikken of
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FWOIRI14: ELIXIR Infrastructuur voor Data en Services om Life-Sciences Onderzoek in Vlaanderen te versterken
1/01/23 → 31/12/26
Project: Fundamenteel
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SRP91: SRP-Groeifinanciering: Synthetische biologie voor de ontwikkeling van microbiële celfabrieken
Peeters, E., Vranken, W. & de Buyl, S.
1/10/22 → 30/09/27
Project: Fundamenteel
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IOF3022: IOF GEAR: Artificial Intelligence Lab
Nowe, A., De Boer, B., Bogaerts, B., Beuls, K., Loeckx, J., Wiggins, G., Lenaerts, T., Vranken, W., Libin, P., Dooms, A., Barbé, K., Ginis, V., Verboven, S. & Van Droogenbroeck, F.
1/01/22 → 31/12/26
Project: Toegepast
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OZR3956: Bilateral cooperation within the framework of a joint doctoral project: benchfee for joint PhD VUB - ULB, HEIDIG Sophie-Luise
26/11/21 → 25/11/25
Project: Fundamenteel
Onderzoeksoutput
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Deciphering the RRM-RNA recognition code: A computational analysis
Roca Martinez, J., Dhondge, H. B., Sattler, M. & Vranken, W., 23 jan 2023, In: PLoS Computational Biology. 19, 1, 24 blz., e1010859.Onderzoeksoutput: Article › peer review
Open Access -
Deep mutational scanning of essential bacterial proteins can guide antibiotic development
Dewachter, L., Brooks, A. N., Noon, K., Cialek, C., Clark-ElSayed, A., Schalck, T., Krishnamurthy, N., Versées, W., Vranken, W. & Michiels, J., 16 jan 2023, In: Nature Communications. 14, 1, 16 blz., 241.Onderzoeksoutput: Article › peer review
Open AccessBestand3 Downloads (Pure) -
Evolution of CRISPR-associated endonucleases as inferred from resurrected proteins
Alonso-Lerma, B., Jabalera, Y., Samperio, S., Morin, M., Fernandez, A., Hille, L. T., Silverstein, R. A., Quesada-Ganuza, A., Reifs, A., Fernández-Peñalver, S., Benitez, Y., Soletto, L., Gavira, J. A., Diaz, A., Vranken, W., Sanchez-Mejias, A., Güell, M., Mojica, F. J. M., Kleinstiver, B. P., Moreno-Pelayo, M. A. & 2 anderen, , jan 2023, In: Nature Microbiology. 8, 1, blz. 77-90 14 blz.Onderzoeksoutput: Article › peer review
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A roadmap to scientific software deployment: bio2Byte Tools as a use case
Gavalda Garcia, J., Díaz, A. & Vranken, W., 11 mrt 2022.Onderzoeksoutput: Poster
Open Access -
Challenges in describing the conformation and dynamics of proteins with ambiguous behavior
Roca Martinez, J., Lazar, T., Gavalda Garcia, J., Bickel, D., Pancsa, R., Dixit, B., Tzavella, K., Ramasamy, P., Sanchez Fornaris, M., Grau, I. & Vranken, W., 3 aug 2022, In: Frontiers in Molecular Biosciences. 9, 17 blz., 959956.Onderzoeksoutput: Article › peer review
Open AccessBestand31 Downloads (Pure)
Datasets
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Conformine Conformational Variability Values
Gavalda Garcia, J. (Creator), Roca Martinez, J. (Creator) & Vranken, W. (Supervisor), Bitbucket, 2023
Dataset
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Bio2Byte SARS-CoV-2
Kagami, L. P. (Creator), Roca Martinez, J. (Creator), Gavalda Garcia, J. (Creator), Ramasamy, P. (Creator), Feenstra, K. A. (Creator) & Vranken, W. (Supervisor), BMC Molecular and Cell Biology, 7 dec 2020
DOI: 10.1186/s12860-021-00362-w, https://bio2byte.be/sars2/
Dataset
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NOUMENON
Vranken, W. (Creator), Bitbucket, 7 mrt 2016
https://bitbucket.org/eddiewrc/noumenon/src/master/
Dataset
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Protein ambiguity
Lazar, T. (Creator), Roca Martinez, J. (Researcher), Pancsa, R. (Creator) & Vranken, W. (Supervisor), Frontiers in Molecular Biosciences, 3 aug 2022
DOI: 10.3389/fmolb.2022.959956, https://bitbucket.org/bio2byte/protein_ambiguity/src/master/
Dataset
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RRMScorer datasets
Roca Martinez, J. (Creator), Vranken, W. (Supervisor) & Dhondge, H. B. (Data Collector), PLOS Computational Biology, 28 jun 2022
https://bitbucket.org/bio2byte/rrmscorer/src/master/Supplementary_information/
Dataset
Activiteiten
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Netherlands Society on Biomolecular Modelling Fall Meeting
Jose Gavalda Garcia (Organiser), Joel Roca Martinez (Organiser), Charlotte Crauwels (Organiser), Konstantina Tzavella (Organiser) & Wim Vranken (Organiser)
27 okt 2022Activiteit: Participation in conference
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Université libre de Bruxelles (Externe Organisatie)
Wim Versées (Jury), François Ancien (Presenter), Wim Vranken (Supervisor), Marianne Rooman (Supervisor) & Ann Nowe (Chair)
14 jan 2022Activiteit: Member of PhD committee
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Vrije Universiteit Amsterdam (Externe Organisatie)
Wim Vranken (Examiner)
7 jan 2021Activiteit: Membership of peer-review panel or committee
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ELIXIR IDP community (Externe Organisatie)
Wim Vranken (Chair)
12 aug 2020Activiteit: Membership of public/government advisory/policy group or panel
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Leveraging the biophysical context of amino acid residues to understand protein behaviour
Wim Vranken (Speaker)
13 feb 2020Activiteit: Talk or presentation at a conference
Scriptie
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Identification and characterization of putative transcriptional regulators in archaea
Auteur: Donvil, L., Peeters, E. & Vranken, W., 10 sep 2018Begeleider: Orlando, G. (Advisor), de Buyl, S. (Jury) & De Greve, H. (Jury)
Scriptie/Masterproef: Master's Thesis
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Unravelling the information transfer through the second SH2 domain from the human phosphatase PTPN11 by NMR.
Auteur: Rubio Fernández, L., Van Nuland, N., Lenaerts, T., Beeckmans, S., Vranken, W., Loris, R., De Proft, F., Constantinescu, S. & Nash, P., 19 mrt 2015Scriptie/Masterproef: Doctoral Thesis
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Unravelling the microbial ecosystems of food-related brines through a metagenomics approach
Auteur: Vermote, L., Weckx, S., Peeters, E. & Vranken, W., jul 2016Scriptie/Masterproef: Master's Thesis