Projecten per jaar
Persoonlijk profiel
Expertise
Structural Bioinformatics and computational biology
- Prediction of biophysical characteristics of proteins from their sequence
- Effect of amino acid variants on proteins and organisms
Computational aspects of Nuclear Magnetic Resonance (NMR)
- Statistical analysis of NMR data in relation to protein structure
- Structure determination of proteins from experimental NMR data
Opleiding / Academische kwalificatie
Chemistry, Ph.D., Ghent University
1 dec 1992 → 19 dec 1996
Datum van toekenning: 19 dec 1996
Externe posities
VUB director, Interuniversity Institute of Bioinformatics in Brussels
apr 2014 → …
Maitre d'enseignement, Université libre de Bruxelles
2011 → …
Scientific officer (NMR), European Bioinformatics Institute
1 okt 2001 → 30 sep 2010
Research Fellow, Biotechnology Research Institute, National Research Council, Montreal
1 jan 2000 → 31 aug 2001
Postdoctoral researcher, Université libre de Bruxelles
1 jan 1999 → 31 dec 1999
Postdoctoral researcher, Biotechnology Research Institute, National Research Council, Montreal
1 jan 1997 → 31 dec 1998
Vingerafdruk
Verdiep u in de onderzoeksgebieden waarop Wim Vranken actief is. Deze onderwerplabels komen uit het werk van deze persoon. Samen vormen ze een unieke vingerafdruk.
- 1 Soortgelijke profielen
Samenwerkingen en hoofdonderzoeksgebieden uit de afgelopen vijf jaar
Recente externe samenwerking op landen-/regioniveau. Duik in de details door op de stippen te klikken of
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EU670: Prokaryote proteomics at high temperature for single cells
1/01/24 → 31/12/27
Project: Fundamenteel
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OZR4184: OZR Ad hoc financiering: ELIXIR Infrastructuur voor Data en Services om Life-Sciences Onderzoek in Vlaanderen te versterken
1/01/23 → 31/12/26
Project: Fundamenteel
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FWOIRI14: ELIXIR Infrastructuur voor Data en Services om Life-Sciences Onderzoek in Vlaanderen te versterken
1/01/23 → 31/12/26
Project: Fundamenteel
Onderzoeksoutput
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Analysis of the inter-domain orientation of tandem RRM domains with diverse linkers: connecting experimental with AlphaFold2 predicted models
Roca-Martínez, J., Kang, H-S., Sattler, M. & Vranken, W., 1 mrt 2024, In: NAR genomics and bioinformatics. 6, 1, 16 blz., lqae002.Onderzoeksoutput: Article › peer review
Open Access1 Citaat (Scopus) -
Conformational dynamics of α-1 acid glycoprotein (AGP) in cancer: A comparative study of glycosylated and unglycosylated AGP
Dixit, B., Vranken, W. & Ghysels, A., feb 2024, In: Proteins. 92, 2, blz. 246-264 19 blz.Onderzoeksoutput: Article › peer review
1 Citaat (Scopus) -
Data-driven probabilistic definition of the low energy conformational states of protein residues
Gavalda-Garcia, J., Bickel, D., Roca-Martinez, J., Raimondi, D., Orlando, G. & Vranken, W., sep 2024, In: NAR genomics and bioinformatics. 6, 3, 13 blz., lqae082.Onderzoeksoutput: Article › peer review
Open Access -
Effects of phosphorylation on protein backbone dynamics and conformational preferences
Bickel, D. & Vranken, W., 3 jun 2024, In: Journal of Chemical Theory and Computation. 20, 12, blz. 4998-5011 14 blz.Onderzoeksoutput: Article › peer review
1 Citaat (Scopus) -
In-silico identification of archaeal DNA-binding proteins
Donvil, L., Housmans, J., Peeters, E., Vranken, W. & Orlando, G., 9 aug 2024, Biorxiv, 12 blz.Onderzoeksoutput: Voordruk
Open Access
Datasets
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Prediction of Conformational Variability for RRM proteins in inter3m data base
Gavalda Garcia, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 14 feb 2023
DOI: 10.5281/zenodo.7640833, https://doi.org/10.5281/zenodo.7640833
Dataset
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Protein ambiguity
Lazar, T. (Creator), Roca Martinez, J. (Researcher), Pancsa, R. (Creator) & Vranken, W. (Supervisor), Frontiers in Molecular Biosciences, 3 aug 2022
DOI: 10.3389/fmolb.2022.959956, https://bitbucket.org/bio2byte/protein_ambiguity/src/master/
Dataset
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RRMScorer datasets
Roca Martinez, J. (Creator), Vranken, W. (Supervisor) & Dhondge, H. B. (Data Collector), PLOS Computational Biology, 28 jun 2022
DOI: 10.1371/journal.pcbi.1010859, https://bitbucket.org/bio2byte/rrmscorer/src/master/Supplementary_information/
Dataset
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Bio2Byte SARS-CoV-2
Kagami, L. P. (Creator), Roca Martinez, J. (Creator), Gavalda Garcia, J. (Creator), Ramasamy, P. (Creator), Feenstra, K. A. (Creator) & Vranken, W. (Supervisor), BMC Molecular and Cell Biology, 7 dec 2020
DOI: 10.1186/s12860-021-00362-w, https://bio2byte.be/sars2/
Dataset
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ConforMine Molecular Dynamics Data: Conformational Variability, Secondary Structure Propensities and Molecular Dynamics Simulations
Gavalda Garcia, J. (Creator), Roca Martinez, J. (Creator) & Vranken, W. (Supervisor), Zenodo, 2023
DOI: 10.5281/zenodo.7575777, https://doi.org/10.5281/zenodo.7575777
Dataset
Activiteiten
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A.I. in Structural Biology
Carl Mensch (Organiser), Wim Vranken (Chair), Tamas Lazar (Chair), Savvas Savvides (Chair), Wouter Van Putte (Chair), Marc F Lensink (Chair) & Arne Elofsson (Chair)
19 jan 2024Activiteit: Participation in conference
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Toegepaste Biologische Wetenschappen (Organisatie)
Eveline Peeters (Supervisor), Wim Vranken (Supervisor), Dominique Maes (Chair), Charles Van der Henst (Jury), Geert Angenon (Jury), Kiavash Movahedi (Jury), Sébastien Ferreira-Cerca (Jury) & Louis Droogmans (Jury)
9 mrt 2023Activiteit: Member of PhD committee
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Toegepaste Biologische Wetenschappen (Organisatie)
Wim Vranken (Chair), Eveline Peeters (Jury), Jean-Pierre Hernalsteens (Jury), Jos Ruytinx (Jury), Geert Angenon (Supervisor), Sofie Goormachtig (Jury) & Elizabeth Kairuz Hernández-Díaz (Jury)
15 jun 2023Activiteit: Member of PhD committee
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Netherlands Society on Biomolecular Modelling Fall Meeting
Jose Gavalda Garcia (Organiser), Joel Roca Martinez (Organiser), Charlotte Crauwels (Organiser), Konstantina Tzavella (Organiser) & Wim Vranken (Organiser)
27 okt 2022Activiteit: Participation in conference
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Université libre de Bruxelles (Externe Organisatie)
Wim Versées (Jury), François Ancien (Presenter), Wim Vranken (Supervisor), Marianne Rooman (Supervisor) & Ann Nowe (Chair)
14 jan 2022Activiteit: Member of PhD committee
Scriptie
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Identification and characterization of putative transcriptional regulators in archaea
Auteur: Donvil, L., Peeters, E. & Vranken, W., 10 sep 2018Begeleider: Orlando, G. (Advisor), de Buyl, S. (Jury) & De Greve, H. (Jury)
Scriptie/Masterproef: Master's Thesis
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Surface Interactions and Sperm Motility in Microfluidic Chips
Auteur: Ndayra, O., Messens, J., Vranken, W., Misko, V. R. & De Malsche, W., 25 jun 2024Begeleider: Benko, L. M. (Advisor)
Scriptie/Masterproef: Master's Thesis
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Unravelling the microbial ecosystems of food-related brines through a metagenomics approach
Auteur: Vermote, L., Weckx, S., Peeters, E. & Vranken, W., jul 2016Scriptie/Masterproef: Master's Thesis